Clarithromycin
macrolide antibacterial; strong CYP3A4 and P-glycoprotein inhibitor [1]
Also sold as Biaxin, Biaxin XL, Klacid, Klaricid, Klav.
Findings for this medication
Research about this medication, graded for how strongly each finding can be attributed to it. Nothing here describes your own levels.
Clarithromycin has no classical depletion machinery of the kind that removes a nutrient. It is metabolized to an active 14-hydroxy metabolite, is described on the label as a strong CYP3A4 inhibitor and a P-glycoprotein inhibitor, and about 20% (250 mg) to 30% (500 mg) of a dose is excreted unchanged in urine, with a further 10 to 15% as the metabolite [1]. Its documented interactions are drug-to-drug (colchicine, statins, warfarin, digoxin, theophylline, zidovudine) and are pharmacokinetic or timing matters, not nutrient losses. The label lists no vitamin or mineral that the drug lowers. The only nutrient language in it runs the other way: uncorrected hypokalemia or hypomagnesemia is a condition to avoid because of QT prolongation [1]. Clarithromycin is a component of H. pylori eradication regimens, and most of the microbiome and iron evidence below comes from such regimens, which carry that indication and its co-drugs.
macrolide antibacterial; strong CYP3A4 and P-glycoprotein inhibitor [1] · ATC J01FA09 (WHO ATC/DDD Index [3]) · also sold as Biaxin and Biaxin XL and Klacid and Klaricid and Klav and Crixan; many generics [4][34] · reviewed 2026-10-09. This describes research about the medication. It does not say anything about your own levels or health.
How to read the evidence grades
These colours describe how strongly a finding can be attributed to the medication in the research. They are not a severity score and they say nothing about your own health.
Grades describe how strongly a finding can be attributed to Clarithromycin in the research — not how common it is, how serious it would be, and not anything about you personally.
- Red — Severe
- Two or more independent Tier A sources, this drug in the cohort, the nutrient directly measured, consistent direction, clinically meaningful magnitude, a named mechanism, no substantial contradicting Tier A evidence.
- Orange — Moderate
- At least one Tier A source with this drug in the cohort showing a real but bounded deficit: an exposure window, a subgroup, low frequency, or a functional rather than circulating deficit.
- Yellow — Low
- Mechanistic plausibility only (Tier B), or class extrapolation (Tier C) with no drug-specific human status data; also used for context flags and interactions running the other direction.
- Not graded — disclosed evidence gap
- Nothing has been measured here, so this finding cannot be graded. That does not establish either safety or harm, and it is not the same as a White result.Source definition: Not gradeable under the rules above because nothing has been measured. Published as a documented gap, never as reassurance that there is no effect.
What the research found
Potassium and magnesium: low levels raise clarithromycin QT risk (nutrient-to-drug direction; not a drug-caused depletion)
Yellow — LowSee study details
The label lists uncorrected hypokalemia or hypomagnesemia among the conditions in which clarithromycin should be avoided because of QT prolongation; no source located shows clarithromycin lowering either electrolyte.
Full detail and limits
Potassium and magnesium: low levels raise clarithromycin QT risk (nutrient-to-drug direction; not a drug-caused depletion)
Yellow — LowWhat the grade means here: Mechanistic plausibility only (Tier B), or class extrapolation (Tier C) with no drug-specific human status data; also used for context flags and interactions running the other direction. Yellow
Limits on what this shows
- Null findings: No clarithromycin-specific measurement of serum potassium or magnesium before and after treatment was found. The PubMed listing used an OR operator and was broad (172 records, mostly unrelated); two reviews in it (Tisdale 2016, Abo-Salem 2014) list hypokalemia and hypomagnesemia as modifiable risk factors, read at listing-line level only [23].
- At-risk subgroups: People with long QT, bradycardia, uncorrected electrolyte disturbance, the elderly [1]; women (rate ratio 2.83 in one cohort) [21]; people with coronary artery disease [22][1]; people taking other CYP3A4 substrates that prolong QT.
Direction
Risk modifier running from the nutrient to the drug outcome (Hard Rule 4). Not depletion and not retention. QT prolongation, cardiac death and the CLARICOR mortality signal are clinical outcomes and the drug's own toxicity (Hard Rule 2), not nutrient findings.
Regulatory status
US label, QT Prolongation: avoid in patients with known QT prolongation and in those with "uncorrected hypokalemia or hypomagnesemia"; elderly patients may be more susceptible [1]. The same wording appears on a second label-derived page [2]. Hypokalemia is not listed as an adverse reaction in the sections read.
Population evidence (outcomes, not nutrients)
Svanström 2014 [21]: Danish register cohort, adults aged 40 to 74, 7-day courses of clarithromycin (n = 160,297), roxithromycin (n = 588,988) or penicillin V (n = 4,355,309); 285 cardiac deaths; clarithromycin vs penicillin V adjusted rate ratio 1.76 (95% CI 1.08 to 2.85), roxithromycin 1.04 (0.72 to 1.51); clarithromycin in women 2.83 (1.50 to 5.36) vs men 1.09 (0.51 to 2.35) (OpenAlex reconstructed abstract; BMJ page not opened). Jespersen 2006, CLARICOR [22]: 4,373 patients with stable coronary heart disease randomized to clarithromycin 500 mg/day or placebo for 2 weeks; primary composite hazard ratio 1.15 (0.99 to 1.34); all-cause mortality 1.27 (1.03 to 1.54); cardiovascular mortality 1.45 (1.09 to 1.92) (OpenAlex reconstructed abstract). The label reports a 10-year all-cause mortality hazard ratio of 1.10 (95% CI 1.00 to 1.21) in coronary artery disease and states the cause is not established [1]. Serum potassium and magnesium were not reported in these abstracts.
Mechanism
Present for the outcome: macrolide QT prolongation is thought to involve hERG potassium-channel blockade, and heart-mitochondria injury has been proposed as an initial step [17]; low potassium and magnesium are established amplifiers in review literature [23]. Absent for depletion: none of the first 10 of 172 records in a PubMed listing showed clarithromycin lowering potassium or magnesium [23].
Counter-evidence held on record
Counter-evidence and confounding Both outcome studies are about the drug, not the electrolytes; Svanström is observational with a penicillin V comparator and CLARICOR enrolled people with coronary heart disease, so neither isolates a nutrient effect. The absolute excess in Svanström is small (37 deaths per 1 million courses, 95% CI 4 to 90). Framing caution Low potassium or magnesium makes the drug riskier; the drug is not shown to cause low potassium or magnesium. Do not suggest potassium or magnesium supplements because of clarithromycin. Correcting an existing deficit is a prescriber decision.
Taste disturbance and GI adverse effects: label-documented intake-side effect (mechanism H); no nutrient measured
Yellow — LowSee study details
Taste perversion is among the most frequent clarithromycin adverse reactions and can reduce food enjoyment and intake; no study measured nutrient intake or status because of it.
Full detail and limits
Taste disturbance and GI adverse effects: label-documented intake-side effect (mechanism H); no nutrient measured
Yellow — LowWhat the grade means here: Mechanistic plausibility only (Tier B), or class extrapolation (Tier C) with no drug-specific human status data; also used for context flags and interactions running the other direction. Yellow
Direction
Possible reduced intake through altered taste or GI symptoms (mechanism H). A context flag and a drug adverse reaction, not a deficiency (Hard Rule 2).
Regulatory status
Label adverse reactions: taste perversion 8% with clarithromycin vs 0.3% with placebo in the Mycobacterium avium complex prophylaxis trial in immunocompromised adults (described as significantly higher); 19% in one treatment trial, 0% in another and 4% combined in the first 12 weeks of treatment at 500 mg twice daily; 15% with clarithromycin plus omeprazole vs 1% with omeprazole alone in H. pylori treatment [1][2]. Dysgeusia is listed among the most frequent reactions. Tooth discoloration (usually reversible with professional cleaning) and reversible hearing loss, chiefly in elderly women, are also listed [1].
Population evidence
Label trial tables only (above). No study of taste change, food intake, appetite or weight with clarithromycin was retrieved.
Mechanism
Not described in the sources read. Zinc status and taste were not searched in this review (the one attempted zinc listing is described under Sources).
Counter-evidence held on record
Counter-evidence and confounding Frequencies come from industry trials with very different populations (0% to 19%), and the H. pylori figure is with a combination regimen. Taste change is transient in most people while on treatment. Framing caution A symptom context flag only. It does not support a nutrient, zinc or supplement recommendation.
Food and drug timing: food-to-drug direction; tablets may be taken with or without food, and zidovudine doses should be separated (timing interactions, not depletion)
Yellow — LowSee study details
Food slightly delays absorption and raises the peak concentration by about 24% without changing overall exposure; the label gives a two-hour separation only for zidovudine.
Full detail and limits
Food and drug timing: food-to-drug direction; tablets may be taken with or without food, and zidovudine doses should be separated (timing interactions, not depletion)
Yellow — LowWhat the grade means here: Mechanistic plausibility only (Tier B), or class extrapolation (Tier C) with no drug-specific human status data; also used for context flags and interactions running the other direction. Yellow
Direction
Food to drug and drug to drug (Hard Rule 4): timing interactions with a separation interval, not a nutrient depletion. No nutrient is lowered.
Regulatory status
Label: "clarithromycin tablets may be given without regard to food"; food delays absorption slightly and raises peak concentration by about 24% without changing overall exposure; bioavailability about 50% for the 250 mg tablet [1]. Zidovudine and clarithromycin "should be separated by at least two hours" [1]. A consumer page advises extended-release tablets be taken with food (Tier D; the label's extended-release section was not read) [34]. The label sections read state nothing about antacids, calcium, iron or grapefruit; omeprazole increases clarithromycin and 14-OH clarithromycin plasma levels [1].
Population evidence
Label pharmacokinetic text only; no separate food-effect trial was retrieved.
Mechanism
Delayed absorption with food; the active metabolite and CYP3A4/P-glycoprotein inhibition create the drug-drug effects [1].
Counter-evidence held on record
Counter-evidence and confounding The label itself says food is not a constraint for the immediate-release tablet, so the interval is not a hard rule for food. Framing caution This is a timing note about the drug, not a statement that food or minerals are depleted. No supplement is implied.
The five body-system areas
Each finding is counted once, in a single area. Where a study is mentioned in a second area it is context only.
Mitochondrial Burden
Each finding below is counted once, in this area only.
Mitochondrial burden: reduced oxygen consumption and organelle injury in cell and rat-mitochondria models at concentrations not compared with plasma levels; no human tissue measurement
Yellow — LowSee study details
Laboratory studies using clarithromycin show lower oxygen consumption in liver cells, mitochondrial swelling and permeabilization in isolated rat heart mitochondria, and mixed bioenergetic signals in muscle cells; none is a human measurement.
Full detail and limits
Mitochondrial burden: reduced oxygen consumption and organelle injury in cell and rat-mitochondria models at concentrations not compared with plasma levels; no human tissue measurement
Yellow — LowWhat the grade means here: Mechanistic plausibility only (Tier B), or class extrapolation (Tier C) with no drug-specific human status data; also used for context flags and interactions running the other direction. Yellow
Limits on what this shows
- Null findings: No human measurement (muscle, blood cells, lactate, respirometry) after clarithromycin was found in the PubMed listing of 10 records [20]. The cell and organelle concentrations were not compared with the clinical plasma peak, which this review could not retrieve for the parent drug (the label read gave only the 14-OH metabolite peak of about 0.6 mcg/mL on 250 mg every 12 hours) [1].
Direction
Possible mitochondrial electron-transport inhibition (mechanistic plausibility). Not a nutrient deficiency. Clinical hepatotoxicity is a drug toxicity and is not filed here (Hard Rule 2).
Regulatory status
The label has a Hepatotoxicity warning ("Discontinue clarithromycin immediately if signs and symptoms of hepatitis occur"; hepatic failure with fatal outcome reported, usually with serious underlying disease or concomitant medications) and mentions lactic acidosis only in the verapamil interaction row; it does not describe mitochondrial effects [1].
Population evidence (Tier B, in vitro and organelle; abstracts and one full text)
Woodhead 2019 [16]: HepG2 cells, Seahorse assay; clarithromycin decreased basal oxygen consumption after 24 hours but not after 1 hour, fit as "saturable ETC inhibition at low concentrations and complete ETC inhibition at higher concentrations"; median intracellular-to-medium ratio 15.2; in the DILIsym liver-injury model (285 simulated people) the largest fall in simulated ALT elevations came when electron-transport inhibition was omitted, and the authors conclude clarithromycin toxicity is caused mainly by mitochondrial electron-transport inhibition (full text via a fetch tool; concentrations, IC50 values and ATP not in the text read). Salimi 2015 [17]: isolated rat heart mitochondria exposed to erythromycin, azithromycin or clarithromycin showed ROS formation, mitochondrial membrane permeabilization, swelling and cytochrome c release (reconstructed abstract; concentrations not retrieved). Yamamoto 2024 [18]: clarithromycin reduced oxygen consumption rate in NIPSNAP1/2 double-knockout cells in a dose-dependent manner and the authors conclude it suppresses IL-8 through mitochondrial quality control (reconstructed abstract; no numbers). Kuretu 2024 [19]: C2C12 muscle cells exposed for 24 hours (cytotoxicity 25 to 400 micromolar, functional assays 25 to 100 micromolar) to six drugs including clarithromycin; mitochondrial membrane potential increased significantly at all clarithromycin concentrations, GLUT4 and Akt expression fell at all concentrations, and tafazzin expression fell (significant only at 100 micromolar) (full text via a fetch tool; significance flags only, no numbers).
Supporting listing lines (not opened)
PubMed listing [20]: Qiao 2006 (N-demethyl-clarithromycin, a metabolite, triggers mitochondria- and caspase-linked apoptosis in HeLa cells, snippet only) and Mathis 2005 (clarithromycin reduced vesicle formation in the helminth Echinococcus multilocularis with mitochondrial alterations on electron microscopy, snippet only). Used as pointers, not as evidence.
Mechanism
Proposed: the mitochondrial large ribosomal subunit resembles the bacterial 50S ribosome, so a 50S-binding macrolide may impair mitochondrial translation; this is stated for macrolides generally and was not tested for clarithromycin in the sources opened. Direct electron-transport inhibition is the mechanism favored by Woodhead [16].
Counter-evidence held on record
Counter-evidence and confounding Cell-line and organelle exposures do not establish tissue exposure in people, and two of the studies used cancer, embryonic-kidney-like or immortalized lines. Directions differ between assays (see ATP production). Framing caution Do not state that clarithromycin damages mitochondria in people or causes fatigue through energy failure. This is a laboratory hypothesis, graded for mechanistic plausibility only.
Oxidative Stress
Each finding below is counted once, in this area only.
Oxidative stress: higher urinary oxidised DNA and RNA markers after one week of clarithromycin in healthy adults (excess oxidative modification, not antioxidant depletion); one trial report, plasma malondialdehyde unchanged
Orange — ModerateSee study details
In two randomized placebo-controlled trials in healthy adults, one week of clarithromycin raised 24-hour urinary 8-oxodG by 22.0% and 8-oxoGuo by 14.9%, but did not change plasma malondialdehyde.
Full detail and limits
Oxidative stress: higher urinary oxidised DNA and RNA markers after one week of clarithromycin in healthy adults (excess oxidative modification, not antioxidant depletion); one trial report, plasma malondialdehyde unchanged
Orange — ModerateWhat the grade means here: At least one Tier A source with this drug in the cohort showing a real but bounded deficit: an exposure window, a subgroup, low frequency, or a functional rather than circulating deficit. Orange
Limits on what this shows
- Null findings: Plasma malondialdehyde unchanged [14]. In a PubMed listing of 43 records for "clarithromycin oxidative stress" the first 10 contained one human study (Larsen) and otherwise algae, cyanobacteria, mycobacteria and H. pylori work; 33 records were not read [15]. No human antioxidant-capacity or glutathione measurement with clarithromycin was found.
- At-risk subgroups: None established.
Direction
Excess oxidative modification of nucleic acids (pro-oxidant direction). It is not a measure of vitamin C, vitamin E, glutathione or any antioxidant nutrient, and no supplement is implied (Hard Rule 5).
Regulatory status
The label sections read contain no oxidative-stress statement; hepatotoxicity is a warning and is a drug toxicity [1].
Population evidence (Tier A)
Larsen 2017 [14]: data from two randomized, placebo-controlled trials in healthy adults. Participants received one week of clarithromycin, trimethoprim, phenoxymethylpenicillin or placebo; 24-hour urinary 8-oxo-7,8-dihydro-2'-deoxyguanosine (8-oxodG, DNA oxidation) and 8-oxo-7,8-dihydroguanosine (8-oxoGuo, RNA oxidation) and plasma malondialdehyde were measured before and after treatment. Clarithromycin increased 8-oxodG by 22.0% (95% CI 3.6 to 40.4%) and 8-oxoGuo by 14.9% (95% CI 3.7 to 26.1%); trimethoprim lowered 8-oxodG by 21.7% (5.8 to 37.6%) with no change in 8-oxoGuo; penicillin V changed neither; no drug changed plasma malondialdehyde. The same result was read on three channels (OpenAlex works/pmid record, a PubMed uid record and the journal-society page). Participant numbers per arm, the clarithromycin dose and the baseline values were NOT retrieved: PMC (PMC5510073) returned a bot-verification page and the Wiley page did not load.
Supporting Tier B
Woodhead 2019 [16]: in HepG2 cells all five macrolides tested, clarithromycin included, increased reactive oxygen and nitrogen species in a concentration-dependent manner after 24 hours but not after 1 hour (DHE probe; no numbers in the text read). Salimi 2015 [17]: clarithromycin, erythromycin and azithromycin induced ROS formation in isolated rat heart mitochondria (reconstructed abstract; concentrations not retrieved). Kuretu 2024 [19]: in C2C12 muscle cells (25 to 100 micromolar, 24 hours) clarithromycin raised malondialdehyde at all concentrations and raised ROS, with the 50 micromolar ROS result not significant (full text via a fetch tool; no numbers).
Context, not counted
Götz 1997 [31]: in 63 patients given omeprazole or ranitidine plus clarithromycin and metronidazole, Mn superoxide dismutase fell and Cu/Zn superoxide dismutase rose in gastric mucosa 8 weeks after successful eradication. This is the effect of clearing the infection, in regimens that contain clarithromycin in both arms, and says nothing about the drug alone.
Mechanism
Proposed, not shown in people: mitochondrial electron transport inhibition raising ROS in cell and organelle models [16][17][19]. Larsen state only that the finding may relate to clarithromycin adverse effects.
Why orange, not red
One human trial report supplies the direct measurement, with a bounded exposure (one week), a bounded population (healthy adults) and a functional marker (urinary oxidised nucleoside excretion, a rise of 15 to 22%) rather than a measured antioxidant deficit; no second independent human study of clarithromycin and an oxidative marker was found, and plasma malondialdehyde did not move.
Counter-evidence held on record
Counter-evidence and confounding Per-arm sample size, dose and absolute values were not retrieved, so the clinical weight of a 15 to 22% shift in a urinary marker cannot be judged here. The in vitro supporting data used concentrations that were not compared with plasma levels. Infection and inflammation themselves change these markers; the trials were in healthy volunteers, which avoids that confound but does not tell what happens during illness. Framing caution Do not say clarithromycin depletes antioxidants or damages DNA in patients. The finding is a short-term rise in urinary markers of nucleic-acid oxidation in healthy adults. No antioxidant supplement is implied.
Copper and Iron Balance
Copper and iron are assessed separately. Nothing here is counted twice.
Iron: indication-linked context (H. pylori infection is associated with iron deficiency and eradication raises ferritin); no study shows clarithromycin lowering iron
Yellow — LowSee study details
Clarithromycin is a component of H. pylori eradication regimens, and in meta-analysis eradication therapy raised ferritin; the iron signal belongs to the infection, not to the drug.
Full detail and limits
Iron: indication-linked context (H. pylori infection is associated with iron deficiency and eradication raises ferritin); no study shows clarithromycin lowering iron
Yellow — LowWhat the grade means here: Mechanistic plausibility only (Tier B), or class extrapolation (Tier C) with no drug-specific human status data; also used for context flags and interactions running the other direction. Yellow
Limits on what this shows
- Null findings: No study of clarithromycin alone on iron absorption, ferritin or hemoglobin was found; the PubMed listing "clarithromycin anemia hemoglobin" [25] returned H. pylori and iron-deficiency papers and one mouse report. The PubMed listing "clarithromycin copper" returned the Pharmazie record as its only iron-related item [29]. A PubMed listing "clarithromycin ferritin" (17 records, first 10 read) held only H. pylori eradication papers and unrelated infection reports, with none flagged for an effect of clarithromycin itself on iron status, absorption or hemoglobin; snippets included Tseng 2019 (persistent iron deficiency anemia 24.3% in treated vs 26.5% in untreated groups, P = 0.71) and Wallace 2004 (no ferritin difference between eradicated and persistently positive adults), read at listing-line level only [39].
Direction
Reverse or neutral for the drug: regimens that include clarithromycin are associated with improved iron stores because they treat the infection. Indication-linked deficiency, a context flag (Hard Rule 6); not depletion by clarithromycin and not merged with Copper (Hard Rule 7).
Regulatory status
No iron statement in the label sections read [1].
Population evidence (Tier C, regimen level; clarithromycin not separable)
Hudak 2017 [27]: systematic review and meta-analysis; H. pylori infection vs none, 14 observational studies for iron deficiency anemia pooled OR 1.72 (95% CI 1.23 to 2.42), 30 studies for iron deficiency OR 1.33 (1.15 to 1.54), 23 for anemia OR 1.15 (1.00 to 1.32); across 7 randomized trials eradication therapy increased ferritin (standardized mean difference 0.53, 95% CI 0.21 to 0.85) but did not significantly change hemoglobin (0.36, -0.07 to 0.78); significant heterogeneity and publication bias (OpenAlex reconstructed abstract). Which regimens the 7 trials used was not retrieved. Sarker 2008 [28]: randomized trial in Bangladeshi children whose indexing keywords name clarithromycin, amoxicillin and omeprazole with ferrous sulfate and hemoglobin, ferritin and soluble transferrin receptor outcomes (metadata only; abstract and results not retrieved).
CLASS EXTRAPOLATION / regimen level
Cohort test: clarithromycin is named in the Sarker trial keywords only; Hudak's trial regimens were not retrieved, so for this drug the iron data are regimen-level (Tier C), capped at yellow, and they run toward better iron status.
Mechanism
The mechanism of the infection effect was not retrieved in the sources read, and none is established for the drug. In vitro, a Pharmazie 2003 study of roxithromycin, clarithromycin and azithromycin with Cu(II), Zn(II) and Fe(II) exists, but its record has no abstract, so whether it found iron binding is unknown [30].
Counter-evidence held on record
Counter-evidence and confounding Confounding by indication is presumed: the same patients have a gastric infection that independently lowers iron. Eradication regimens differ in co-drugs, and the pooled hemoglobin effect was not significant. Framing caution Do not state that clarithromycin lowers iron or causes iron deficiency, and do not suggest iron supplementation because of clarithromycin. Iron status in H. pylori infection is a clinician question.
Copper
Not graded — disclosed evidence gapSee study details
No evidence was retrieved that clarithromycin changes copper absorption, serum copper or ceruloplasmin; one in vitro record exists whose results could not be read.
Full detail and limits
Copper
Not graded — disclosed evidence gapWhat the grade means here: Nothing has been measured here, so this finding cannot be graded. That does not establish either safety or harm, and it is not the same as a White result. Ungraded
Limits on what this shows
- Why no grade: Dual condition met on the evidence actually read: no Tier B or Tier C result linking clarithromycin to a copper change was retrieved (the one in vitro record has no readable result), and no circulating consumer claim about clarithromycin and copper was found. Tooling-limited rather than a proven genuine gap: if the Hamdan full text shows clarithromycin binding Cu(II), this should move to yellow. Not a finding of safety.
What was searched
DailyMed label [1] and a second label-derived page [2] (no copper statement); PubMed listing "clarithromycin copper" (10 records, one page) [29]: items were environmental or synthetic, one H. pylori study on gastric superoxide dismutases (Götz 1997 [31]), a 2002 Pakistani complexation paper whose abstract describes erythromycin, not clarithromycin (Sultana 2002 [32]), and Hamdan 2003 [30]; PubMed listing "clarithromycin vitamin deficiency" (13 records, first 10 read; no mineral or vitamin lowered) [33]; consumer pages [34][35].
Channel outcomes
Hamdan 2003 ("Comparative in vitro investigations of the interaction between some macrolides and Cu(II), Zn(II) and Fe(II)", Pharmazie 58:223-224) indexes clarithromycin, roxithromycin and azithromycin with copper, zinc and iron by HPLC, NMR and UV methods, but its PubMed record has no abstract, so whether it found binding is unknown; the OpenAlex record had only metadata. Götz 1997 measured gastric Cu/Zn superoxide dismutase protein after H. pylori eradication, which is an infection effect, not copper status. No full text of the Pharmazie note was located with the tools available. PMC and Europe PMC returned bot-verification or 429 responses, and Crossref and OpenAlex search endpoints returned errors or unrelated results.
Gut Microbiome Risk
Each finding below is counted once, in this area only.
Gut microbiome risk: fecal diversity and Bifidobacterium, Lactobacillus and E. coli counts fall during and after clarithromycin courses and mostly recover within about 5 weeks to 1 year; macrolide-resistance genes can persist for years (clarithromycin was co-dosed in the large eradication cohorts)
Orange — ModerateSee study details
Clarithromycin-containing courses lowered gut community diversity and key commensal groups in several independent human cohorts, with resistant-organism selection; the shift is time-bounded in most cohorts and cannot be separated from co-administered amoxicillin, metronidazole and acid suppressant in the largest ones.
Full detail and limits
Gut microbiome risk: fecal diversity and Bifidobacterium, Lactobacillus and E. coli counts fall during and after clarithromycin courses and mostly recover within about 5 weeks to 1 year; macrolide-resistance genes can persist for years (clarithromycin was co-dosed in the large eradication cohorts)
Orange — ModerateWhat the grade means here: At least one Tier A source with this drug in the cohort showing a real but bounded deficit: an exposure window, a subgroup, low frequency, or a functional rather than circulating deficit. Orange
Limits on what this shows
- Null and contrary findings: Yap 2016 [10]: 17 H. pylori-positive Malaysian adults on amoxicillin 1,000 mg, clarithromycin 500 mg and pantoprazole 40 mg twice daily for 7 days; no significant alpha-diversity difference between baseline and 6 months after eradication (P > 0.05); Actinobacteria 6.68% at baseline, 4.86% at 6 months and 8.14% at 12 months. Sampling began at 6 months, so it does not test the acute window. In the Elvers volunteer study (d) anaerobes did not change [6]. Liou T14 recovered fully by week 8 [7]. No clarithromycin-specific analysis of short-chain fatty acids or other metabolites was found. PubMed listings "clarithromycin intestinal microbiota diversity" (18 records) and "clarithromycin microbiome randomized" (32 records) surfaced the cohorts above and nothing else with a clarithromycin-only sequencing design in the first 10 records each [12][13].
- At-risk subgroups: People with C. difficile risk factors (label) [1]; children given repeated macrolide courses (Korpela, asthma odds ratio 6.11, 95% CI 1.53 to 26.58 for more than 2 courses in the first 2 years, N = 32 exposed vs 116, an association not a nutrient outcome) [5]; people receiving clarithromycin with metronidazole as concomitant or quadruple therapy, in whom recovery was slower [7].
Direction
Disturbance risk (excess-risk framing). This is not the depletion of a nutrient, and no probiotic or supplement is implied.
Regulatory status
The label states that Clostridium difficile associated diarrhea "may range in severity from mild diarrhea to fatal colitis" and has been reported to occur more than two months after antibacterial use; it also has a "Development of Drug Resistant Bacteria" warning [1]. No label text addresses the microbiome itself.
Population evidence: single-drug healthy volunteers (Tier A, systematic review stratified to clarithromycin)
Elvers 2020 [6]: systematic review of 31 articles of antibiotics commonly used in UK primary care; its abstract states clarithromycin "decreased the populations of Enterobacteria" and reduced Bifidobacterium and Lactobacillus in numbers and diversity for up to 5 weeks. The text describes four clarithromycin studies, all culture-based healthy-volunteer studies. (a) 10 volunteers, 500 mg twice daily for 7 days: fewer Enterobacteria and streptococci, lactobacilli, bifidobacteria and Bacteroides suppressed, C. albicans isolated, normal within 28 days. (b) 12 men: E. coli significantly reduced during treatment, 6 subjects colonised by resistant Gram-negative rods, bifidobacteria and Bacteroides significantly reduced, whole flora normal in all by 35 days. (c) 10 volunteers, 250 mg twice daily for 10 days: E. coli significantly reduced, overgrowth of Klebsiella, Citrobacter or Enterobacter in 6, lactobacilli and bifidobacteria significantly reduced for the study duration, normal within 28 days. (d) 6 volunteers: no change in Candida, enterococci or anaerobes, Enterobacteriaceae slightly reduced, baseline by day 21. The review page showed reference numbers only, so the mapping of its four studies to named primary reports was not confirmed; two primary reports that fit the description were found and their abstracts read (next row). This row is a second-hand summary read through a fetch tool, and the review itself reports heterogeneity and small samples.
Population evidence: single-drug primary reports (Tier A, abstracts read)
Edlund 2000 [36]: 12 healthy men aged 24 to 40 in a crossover with a 6-week washout, moxifloxacin 400 mg daily and clarithromycin 500 mg twice daily, each for 7 days, in two 35-day periods. During clarithromycin E. coli decreased significantly; enterococci, Enterobacter, Citrobacter, Klebsiella and Pseudomonas increased markedly; bifidobacteria, lactobacilli and clostridia were suppressed; peptostreptococci, Veillonella, Bacteroides and fusobacteria were unchanged; the flora returned to normal after 35 days in all volunteers (reconstructed abstract; counts and P-values not retrieved). Brismar 1991 [37]: 20 healthy volunteers, 10 per group, clarithromycin 250 mg every 12 hours or erythromycin ethylsuccinate 1,000 mg every 12 hours for 7 days, stool before, during and after; with clarithromycin streptococci and Enterobacteriaceae decreased and the anaerobic flora was also affected, with more disruption in the erythromycin group (reconstructed abstract; counts and recovery times not retrieved). A third, double-blind placebo-controlled volunteer study of azithromycin and clarithromycin on oropharyngeal and bowel flora (Matute 2002 [38]) exists, but its record has no abstract and no result was read. None of these has a placebo arm that was read.
Population evidence: randomized trial of a clarithromycin triple regimen (Tier A, drug in cohort with co-drugs)
Liou 2019 [7]: multicentre open-label trial in Taiwan, 1,620 adults randomized 1:1:1; 1,214 (75%) analysed at 1 year. Triple therapy T14 was lansoprazole 30 mg, amoxicillin 1 g and clarithromycin 500 mg, each twice daily for 14 days; concomitant therapy C10 was the same three drugs plus metronidazole 500 mg for 10 days; the third arm (bismuth quadruple) contained no clarithromycin. Compared with baseline, alpha diversity was significantly reduced 2 weeks after T14 (P = 0.0002) and after C10 (P < 0.0001). After T14 alpha and beta diversity were restored at week 8 (P = 0.14 and 0.918) and at 1 year; after C10 they were not fully recovered at week 8 (P = 0.0001 and 0.013) or at 1 year (P = 0.019 and 0.064). Faecal E. coli resistance to ampicillin-sulbactam rose from 12% to 66% after T14 and from 7% to 64% after C10 at week 2 and returned to baseline by week 8. Read from a PubMed record summarized by the fetch tool; the OpenAlex record had no abstract and the Lancet page did not open. No numeric diversity indices in the abstract.
Population evidence: other eradication cohorts (Tier A, drug in cohort with co-drugs)
Zhou 2020 [8]: 22 penicillin-allergic children with H. pylori and 23 controls; omeprazole, clarithromycin, metronidazole and bismuth for 14 days; stool 16S at weeks 0, 2, 6 and 52. Alpha diversity fell at week 2 (P < 0.05, except Chao1 P = 0.16), beta diversity changed (P = 0.001 and 0.002), some changes persisted at week 6 and the community had returned almost to baseline at 1 year; Bifidobacterium, Faecalibacterium, Blautia and Bacteroides fell and Escherichia-Shigella, Klebsiella, Enterococcus and Streptococcus rose (reconstructed abstract). Wu 2019 [9]: duodenal ulcer patients randomized to PPI, clarithromycin and amoxicillin with or without a probiotic; the abstract states anti-H. pylori treatment "significantly reduces intestinal microbiota diversity" and fungi decreased, with sample size and numeric results not retrieved (reconstructed abstract only). Jakobsson 2010 [11]: 6 adults, 3 treated with metronidazole 400 mg, clarithromycin 250 mg and omeprazole 20 mg twice daily for 7 days; fecal Actinobacteria (Bifidobacterium, Collinsella) fell sharply and Shannon diversity fell; erm(B) rose 3 to 5 orders of magnitude, was still more than 1,000-fold higher at 1 year and detectable at 4 years; the authors state the sample was too small to test significance.
Population evidence: children, macrolides pooled (Tier A for the exposure, clarithromycin not separable)
Korpela 2016 [5]: 142 Finnish children with fecal samples (257 samples) and purchase records. Cohort test, run on the full text: "azithromycin and clarithromycin" were grouped as macrolides, with no counts or analysis by drug. Macrolide use was followed by lower Actinobacteria (Bifidobacterium 4 to 10-fold lower in the first 6 months, "in many cases to below detectability"), about 2-fold more Bacteroides and Proteobacteria, lower bile-salt hydrolase, and macrolide-resistance genes that fell with time since the last course (r = -0.31, P = 0.005); richness "did not reach the level of the control samples even 12-24 months after the course" and Collinsella, Lactobacillus and Anaerostipes stayed reduced up to 2 years. Observational; clarithromycin is in the cohort but its share is unknown, so it supports the direction without isolating the drug.
CLASS EXTRAPOLATION
None used for the grade. The azithromycin and erythromycin trials covered in sibling dossiers (mass-treatment cohorts and the 4-week erythromycin trial) did not include clarithromycin and were not opened for this entry; they contribute nothing here.
Mechanism
Present and named: binding of the bacterial 50S ribosomal subunit (23S rRNA) blocks protein synthesis [4], and commensals with susceptible ribosomes are exposed to a drug that distributes readily into tissues and fluids [1]. The taxa-to-function link is inferred from co-movement in the cohorts, not proven.
Why orange, not red
Clarithromycin clears the independent-source threshold on direction and mechanism, but red is withheld for four reasons. (a) In the single-drug volunteer studies and in the clarithromycin triple arm the effect recovered within about 28 to 56 days [6][7], which is time-bounded in the series sense. (b) In every large cohort clarithromycin was co-administered with amoxicillin or metronidazole and a PPI, so attribution to clarithromycin alone rests on small culture-based volunteer studies (10 to 12 people each) without a placebo arm that could be read [6][36][37]; the one placebo-controlled volunteer study found had no readable result [38]. (c) The persistence evidence (erm(B) at 4 years in 3 people, richness gaps at 12 to 24 months in children) comes from cohorts where clarithromycin is mixed with other drugs [11][5]. (d) One cohort found no alpha-diversity change at 6 months [10], and no cohort linked a change to a measured nutrient or clinical outcome.
Counter-evidence held on record
Counter-evidence and confounding Culture-based volunteer studies miss most taxa; the sequencing cohorts treat H. pylori with other antibiotics and a PPI, and PPIs alone alter the gut community. The pooled-macrolide children cohort has confounding by infection and age. Effect sizes in the sequencing cohorts were mostly P-values in abstracts, with no confidence intervals retrieved. Framing caution This is a disturbance risk during and after a course, not a depleted nutrient and not a reason to take a probiotic or supplement. Do not present it as permanent damage; most cohorts show recovery. Persistent or severe diarrhea is a clinician question because of C. difficile [1].
Oxygen and ATP Output
Oxygen delivery and ATP production are assessed separately. Nothing here is counted twice.
ATP production: lower oxygen consumption in liver cells but higher ATP reported in muscle cells; directions conflict and no human measurement exists
Yellow — LowSee study details
One cell study reports reduced respiration after 24 hours and another reports higher ATP at some concentrations; neither is a human or tissue measurement.
Full detail and limits
ATP production: lower oxygen consumption in liver cells but higher ATP reported in muscle cells; directions conflict and no human measurement exists
Yellow — LowWhat the grade means here: Mechanistic plausibility only (Tier B), or class extrapolation (Tier C) with no drug-specific human status data; also used for context flags and interactions running the other direction. Yellow
Limits on what this shows
- Null findings: No human or animal ATP, lactate or respirometry measurement after clarithromycin was found [20].
Direction
Unclear, possibly reduced or increased cellular ATP output in vitro (mechanistic plausibility only). Not a nutrient deficiency and not independent of the Mitochondrial burden entry.
Regulatory status
Not addressed in the label sections read [1].
Population evidence (Tier B, in vitro; one full text, one abstract)
Kuretu 2024 [19]: in C2C12 cells the article states that "rifampicin, simvastatin and clarithromycin significantly increased the concentration of ATP"; the clarithromycin increase was not significant at 25 and 50 micromolar; no percentage change in the text (the abstract, by contrast, says the mitotoxicant drugs reduced mitochondrial ATP synthesis, which conflicts with the full text for clarithromycin). Woodhead 2019 [16]: lower basal oxygen consumption in HepG2 cells at 24 hours, a respiration surrogate; ATP was not reported in the text read.
Mechanism
Proposed: electron-transport inhibition lowering respiration [16]; the opposite ATP direction in C2C12 cells has no named mechanism in the text read.
Counter-evidence held on record
Counter-evidence and confounding Rests on two in vitro papers that disagree in direction; shares its sources with Mitochondrial burden (see the Overlap map). Effects in cultured cells do not transfer to people. Framing caution Do not attribute low energy, fatigue or reduced ATP to clarithromycin from this entry.
Oxygen delivery/utilization: no human anemia or hemolysis signal; a mouse toxicity report shows clarithromycin worsening zidovudine-induced anemia
Yellow — LowSee study details
A mouse study found anemia far more severe when clarithromycin was combined with zidovudine than with zidovudine alone; clarithromycin alone at 250 or 500 mg/kg caused no significant toxicity, and no human hemolysis or hemoglobin signal was found.
Full detail and limits
Oxygen delivery/utilization: no human anemia or hemolysis signal; a mouse toxicity report shows clarithromycin worsening zidovudine-induced anemia
Yellow — LowWhat the grade means here: Mechanistic plausibility only (Tier B), or class extrapolation (Tier C) with no drug-specific human status data; also used for context flags and interactions running the other direction. Yellow
Limits on what this shows
- Null findings: PubMed listing "clarithromycin hemolytic anemia" (19 records, first 10 read): none identified clarithromycin as the cause of hemolysis; clarithromycin appeared as treatment or comparator [24]. PubMed listing "clarithromycin anemia hemoglobin" (23 records, first 10 read): the only record attributing a hematologic effect to clarithromycin was the mouse report; the rest were H. pylori and iron-deficiency papers [25]. Pages 2 and 3 of those listings, methemoglobinemia and arterial oxygenation were not searched separately.
Direction
Drug-drug pharmacodynamic enhancement of another drug's hematologic toxicity (mouse). Not an iron deficiency and not an oxygen-carrying nutrient deficiency; anemia is not iron deficiency (Hard Rule 2).
Regulatory status
The label sections read list white-cell and liver-enzyme laboratory abnormalities in the prophylaxis trial (WBC below 1 x 10^9/L in 4% vs 0% placebo) and postmarketing thrombocytopenia; no hemoglobin or anemia statement appeared [1][2]. The label advises separating clarithromycin and zidovudine by at least two hours because simultaneous oral dosing of the immediate-release tablet may lower zidovudine concentrations [1].
Population evidence (Tier B, animal; PubMed record abstract through a fetch tool)
Rao 2003 [26]: NIEHS technical report in Swiss CD-1 mice dosed by gavage (clarithromycin 250 to 1,000 mg/kg, about 1 to 4 times the human dose; zidovudine 200 or 400 mg/kg). Zidovudine alone caused slight hematopoietic toxicity with mild declines in red cell count, hemoglobin and hematocrit; clarithromycin alone at 250 or 500 mg/kg caused no significant toxicity, and at 1,000 mg/kg multi-organ toxicity in a few animals and mild leukocytosis; the combination produced anemia "far more severe" than zidovudine alone, with bone-marrow depletion, reticulocytopenia and macrocytic (microcytic in the highest-dose group) anemia. No numeric blood counts in the abstract.
Mechanism
Not stated in the abstract. The label's zidovudine statement is a pharmacokinetic timing interaction, not an explanation for the mouse finding.
Counter-evidence held on record
Counter-evidence and confounding The mouse doses were 1 to 4 times the human dose by body weight, zidovudine was the anemia-causing agent, and the abstract gives no counts. Relevance to people taking clarithromycin alone is not shown. Framing caution Do not state that clarithromycin lowers hemoglobin or oxygen delivery. The one hematologic signal is an interaction with zidovudine in mice. Anemia in H. pylori patients is covered under Iron.
Claims checked and not supported
These circulate online for this medication. They are listed here only so they can be answered, never as findings, and they are not graded.
A claim with no supporting evidence is not necessarily disproven. Where evidence actually argues against a claim, that is stated below.
Vitamin K and B vitamins (gut-flora synthesis lost to antibiotics)
Where it comes from: A consumer guide to antibiotic nutrient depletion: "Broad-spectrum antibiotics can significantly reduce the gut bacteria that produce Vitamin K2"; also names biotin, folate, B12 and B2 [35] (Tier D).
Why it fails: The page names broad-spectrum antibiotics, fluoroquinolones, tetracyclines, aminoglycosides, cephalosporins and trimethoprim products and does not mention clarithromycin or macrolides, so it cannot be attributed to this drug. No vitamin K, B vitamin or coagulation-factor measurement in clarithromycin users was found; a PubMed listing of 13 records for clarithromycin with vitamin deficiency found no vitamin lowered [33]. The microbiome mechanism is real and is graded in its own entry; the INR rise with warfarin on the label is a pharmacokinetic drug interaction [1], not a vitamin K finding. Provisional: could move to yellow if a vitamin measurement study with clarithromycin is found.
Calcium, magnesium, iron, zinc and potassium (binding or excretion by antibiotics)
Where it comes from: Same guide [35] (Tier D): fluoroquinolones and tetracyclines "bind to and form complexes with these minerals"; aminoglycosides "can increase the excretion of potassium and magnesium".
Why it fails: The mechanisms are attributed to other classes. The clarithromycin label sections read describe no mineral or antacid interaction [1], consumer drug pages for clarithromycin mention minerals only as an electrolyte condition to report before dosing and say nothing about depletion [34], and no study located shows clarithromycin lowering any of these minerals [29][33]. The one in vitro macrolide-metal record has no readable result [30].
Clarithromycin lowers potassium or magnesium (causing QT prolongation)
Where it comes from: A reading of the label QT warning [1][2]; no consumer page was found stating this for clarithromycin. Included because the label wording is easily misread.
Why it fails: The label lists low potassium or magnesium as pre-existing risk factors, not effects of the drug; hypokalemia is not an adverse reaction in the sections read. See the Potassium and magnesium entry for the correct direction.
How the body handles this medication
- Metabolism and CYP inhibition
- The main metabolite is 14-OH clarithromycin, which is less active against M. avium complex. The label calls clarithromycin "a strong CYP3A4 inhibitor"; colchicine and lovastatin or simvastatin are contraindicated, atorvastatin is capped at 20 mg daily and pravastatin at 40 mg daily, warfarin needs close INR monitoring, and it inhibits P-glycoprotein (digoxin). These are drug-to-drug effects, not nutrient depletion.[1] DailyMed label (Aurobindo film-coated tablets, revised 10/2023), Clinical Pharmacology and Drug Interactions (read through a summarizing fetch tool, first 100,000 of 101,923 characters)
- Elimination
- About 20% of a 250 mg dose and about 30% of a 500 mg dose are excreted unchanged in urine, plus 10 to 15% as 14-OH clarithromycin; renal clearance approximates the glomerular filtration rate. Half-life about 3 to 4 hours (250 mg every 12 hours) and 5 to 7 hours (500 mg every 8 to 12 hours); metabolite 5 to 6 and 7 to 9 hours. A 50% dose reduction is advised for CLcr below 30 mL/min. Fecal elimination was not in the text read.[1] Clinical Pharmacology, Dosage and Administration
- Absorption and food
- Bioavailability is about 50% for the 250 mg tablet. Tablets "may be given without regard to food"; food delays absorption slightly and raises peak concentration by about 24% without changing overall exposure. No named absorption transporter appeared in the text read.[1] Clinical Pharmacology
- Distribution
- Clarithromycin and 14-OH clarithromycin "distribute readily into body tissues and fluids"; the metabolite reaches a steady-state peak of about 0.6 mcg/mL on 250 mg every 12 hours. The parent peak concentration and protein binding were not in the text read.[1] Clinical Pharmacology
- Mineral, antacid and food interactions
- The label sections read describe no antacid, mineral or grapefruit interaction. Omeprazole raises clarithromycin and 14-OH clarithromycin plasma levels. Zidovudine and clarithromycin "should be separated by at least two hours" because simultaneous oral dosing of the immediate-release tablet may lower zidovudine concentrations. These are drug-to-drug timing matters.[1] Drug Interactions; [2] RxList label page (second channel for adverse-reaction tables)
- Tubular handling, electrolytes and safety flags
- No effect on renal tubular handling of water or electrolytes is described. Hypokalemia and hypomagnesemia appear only as proarrhythmic conditions to avoid. Warnings include QT prolongation, hepatotoxicity, C. difficile associated diarrhea, hypoglycemia with insulin or oral hypoglycemics, an all-cause mortality signal in coronary artery disease 1 to 10 years after exposure, embryo-fetal toxicity, and exacerbation of myasthenia gravis.[1] Warnings and Precautions (section 5)
What the research says is worth watching
General information from the medication label and the studies above. It is not personal medical advice, and any change belongs with your prescriber.
ECG / electrolytes
QT risk factors, potassium and magnesium
The label says to avoid clarithromycin with known QT prolongation or uncorrected hypokalemia or hypomagnesemia; elderly patients may be more susceptible [1]. Worth checking potassium, magnesium and QTc before and during therapy in people with such risks and reviewing other QT-prolonging medicines. The relationship runs from the nutrient to the drug risk. No supplement is recommended here.
Drug interactions (CYP3A4, P-glycoprotein)
Pharmacokinetic interactions, not nutrient effects
Colchicine and lovastatin or simvastatin are contraindicated; atorvastatin is capped at 20 mg and pravastatin at 40 mg daily when co-use cannot be avoided; warfarin needs close INR and prothrombin time monitoring; digoxin levels and theophylline levels may rise; zidovudine should be separated by at least two hours; omeprazole raises clarithromycin levels [1]. INR checks are a drug monitoring matter, not a vitamin K finding. Significant hypoglycemia can occur with insulin or oral hypoglycemic agents; glucose monitoring is advised [1].
Symptoms / GI
Diarrhea, including late-onset
C. difficile associated diarrhea can range from mild to fatal colitis and has been reported more than two months after use [1]. Persistent or severe diarrhea is a clinician question, not a nutrient or probiotic prompt. Microbiome changes mostly recover within weeks to a year [6][7][8].
Lab / symptoms
Liver tests, hearing and taste
Hepatitis and hepatic failure are reported; stop and seek advice if signs of hepatitis occur [1]. Reversible hearing loss (chiefly elderly women), tooth discoloration and taste perversion (0% to 19% in label trials depending on population) are listed [1][2]. These are drug toxicities and adverse reactions, not nutrient findings.
Special populations
Renal impairment, pregnancy, coronary disease, myasthenia
Reduce the dose by 50% for CLcr below 30 mL/min [1]. Pregnancy: not recommended except where no alternative exists; animal studies showed malformations [1]. Coronary artery disease: all-cause mortality was higher 1 year or more after exposure in one trial (10-year hazard ratio 1.10, 95% CI 1.00 to 1.21) and the label states clarithromycin is not approved for coronary artery disease; the cause is not established [1][22]. Myasthenia gravis symptoms may worsen [1].
H. pylori context
Iron, B12 and vitamin D appear as indications, not drug effects
Iron deficiency, B12 deficiency and low vitamin D appear in the H. pylori literature as indications for testing or as patient characteristics associated with eradication response [33]; that is the nutrient or infection affecting treatment, not clarithromycin lowering a nutrient. A clinician decides on testing. No supplement dose appears in this dossier.
Overlap map, to prevent double counting
Entries that rest on the same underlying source or mechanism. Do not count these as independent confirmation.
Mitochondrial burden
Shares evidence with: ATP production; Oxidative stress (in part)
Note: Woodhead 2019 [16], Salimi 2015 [17] and Kuretu 2024 [19] supply the respiration, ROS and ATP statements across the three entries; the ATP entry rests on [19] and [16] alone. Count as one family of in vitro evidence, not three confirmations. Larsen 2017 [14] is a separate human trial and is used only in the Oxidative stress entry.
Gut microbiome risk
Shares evidence with: Within the entry
Note: Liou 2019 [7], Zhou 2020 [8], Wu 2019 [9], Yap 2016 [10] and Jakobsson 2010 [11] are all H. pylori eradication regimens that combine clarithromycin with amoxicillin or metronidazole and acid suppression, so the clarithromycin-specific effect is not separable among them. Elvers 2020 [6] is a review of four older single-drug volunteer studies; Edlund 2000 [36] and Brismar 1991 [37] may be among them (the reference list of that review was not seen), so they must not be counted twice. Korpela 2016 [5] is a separate pooled-macrolide cohort. They are different cohorts, but the drug combination is shared.
Gut microbiome risk
Shares evidence with: Iron
Note: The setting of the microbiome cohorts (H. pylori eradication) is also the setting of the iron evidence [27][28]. They answer different questions (diversity vs ferritin) and share no outcome data.
Potassium and magnesium
Shares evidence with: Fails verification row on lowering
Note: Both rest on the label QT text [1][2]; the rebuttal row and the yellow entry are two views of the same evidence. Svanström 2014 [21] and CLARICOR [22] are outcome studies cited for context, not nutrient evidence.
Iron
Shares evidence with: Copper
Note: Both could draw on the Hamdan 2003 in vitro record (Cu(II), Zn(II), Fe(II) with macrolides) [30], which has no abstract; neither entry uses a result from it. They are separate entries (Hard Rule 7).
Oxygen delivery/utilization
Shares evidence with: Iron
Note: The mouse hematology report [26] is not an iron measurement and the iron entry does not use it; the hemoglobin and anemia PubMed listing [25] feeds both entries as a search channel only.
Taste disturbance and GI effects; Food and drug timing
Shares evidence with: Label [1][2]
Note: Both rest on the same label adverse-reaction and pharmacokinetic text.
Oxidative stress
Shares evidence with: Götz 1997 context
Note: Götz [31] is a context note about eradication and is not counted toward the grade; it also appears as a search outcome under Copper.
All references used above
- Clarithromycin tablets, film coated, prescribing information (DailyMed, Aurobindo Pharma Limited). — Regulatory label (Tier A). Revised 10/2023. Read through a summarizing fetch tool (first 100,000 of 101,923 characters; the last 1,923 characters and the extended-release and suspension details were not read). Source of pharmacokinetics, CYP3A4 and P-glycoprotein statements, food effect, QT, hepatotoxicity, C. difficile, hypoglycemia, coronary-artery-disease mortality (hazard ratio 1.10, 95% CI 1.00 to 1.21), taste-perversion frequencies, laboratory abnormalities and interaction statements. A DailyMed search for "clarithromycin" returned 77 labels (generic tablets, suspension, extended-release and a vonoprazan triple pak); only this one was opened, so statements specific to other formulations were not checked.
- Biaxin (clarithromycin) drug page, RxList. — Label-derived consumer/professional page (Tier D, used as a second channel only). Read through a summarizing fetch tool (first 100,000 of 104,270 characters). Confirmed the taste-perversion frequencies (8% vs 0.3%; 19%, 0%, 4%; 15% vs 1%), the QT electrolyte wording and the absence of any hemoglobin or anemia statement.
- WHO Collaborating Centre, ATC/DDD Index: clarithromycin, J01FA09. — Reference index. Oral DDD 0.5 g, parenteral 1 g; parent groups J01FA macrolides, J01F, J01, J.
- Wikipedia. Clarithromycin. — Reference only, for brand names (Biaxin, Klacid, Klaricid, Klav, Crixan), mechanism and class. Not used as grading evidence. Biaxin XL is named on the Drugs.com page [34].
- Korpela K, et al. Intestinal microbiome is related to lifetime antibiotic use in Finnish pre-school children. Nat Commun 2016;7:10410. — Observational cohort, 236 children, 142 sampled (257 stool samples). Full text read through a summarizing fetch tool. Macrolides were azithromycin and clarithromycin, pooled with no analysis by drug; per-group counts are in Supplementary Table 1, not retrieved. Tier A for the pooled exposure, clarithromycin not separable.Clarithromycin in cohort but not isolated; supporting direction only.
- Elvers KT, et al. Antibiotic-induced changes in the human gut microbiota for the most commonly prescribed antibiotics in primary care in the UK: a systematic review. BMJ Open 2020;10(9):e035677. — Systematic review of 31 articles; PMID 32958481, DOI 10.1136/bmjopen-2019-035677. Abstract read via an OpenAlex works/pmid record and the full-text page via a summarizing fetch tool. Four clarithromycin studies described by reference number only (reference list not on the page); authors, years and Table 2 not retrieved; primary studies not opened. Tier A (systematic review stratified to clarithromycin among other drugs).Primary studies not opened.
- Liou JM, et al. Long-term changes of gut microbiota, antibiotic resistance, and metabolic parameters after Helicobacter pylori eradication: a multicentre, open-label, randomised trial. Lancet Infect Dis 2019;19(10):1109-1120. — Randomized trial, 1,620 participants, 1,214 analysed at 1 year. PMID 31559966, DOI 10.1016/S1473-3099(19)30272-5. Abstract read via a PubMed uid record summarized by the fetch tool (regimens and P-values); the OpenAlex record had no abstract; the PubMed article page returned a bot-verification page and the Lancet page did not load. Tier A, clarithromycin in two of three arms (with co-drugs).Full text not opened; no numeric diversity indices retrieved.
- Zhou Y, et al. Long-term changes in the gut microbiota after 14-day bismuth quadruple therapy in penicillin-allergic children. Helicobacter 2020;25(5):e12721. — Prospective cohort, 22 children with H. pylori and 23 controls. PMID 32656891, DOI 10.1111/hel.12721. Reconstructed abstract (OpenAlex works/pmid record) paraphrased by the fetch tool; some P-value pairings approximate. Tier A, clarithromycin in the regimen with omeprazole, metronidazole and bismuth.Abstract only.
- Wu L, et al. Effects of anti-H. pylori triple therapy and a probiotic complex on intestinal microbiota in duodenal ulcer. Sci Rep 2019;9:12874. — Randomized comparison in duodenal ulcer patients. PMID 31492912, DOI 10.1038/s41598-019-49415-3. Reconstructed abstract (OpenAlex works/pmid record) paraphrased by the fetch tool; sample size, doses and numeric results not retrieved. Tier A, clarithromycin in the triple regimen.Abstract only; N not retrieved.
- Yap TW, et al. Helicobacter pylori eradication causes perturbation of the human gut microbiome in young adults. PLoS One 2016;11(3):e0151893. — Cohort, 17 H. pylori-positive adults at baseline, with 10 and 6 samples at later visits. DOI 10.1371/journal.pone.0151893. PLOS article page read through a summarizing fetch tool. Tier A, clarithromycin 500 mg in the regimen. Sampling at 6, 12 and 18 months only.Null for alpha diversity at 6 months; does not cover the acute window.
- Jakobsson HE, et al. Short-term antibiotic treatment has differing long-term impacts on the human throat and gut microbiome. PLoS One 2010;5(3):e9836. — Cohort, 6 adults (3 treated), metronidazole plus clarithromycin plus omeprazole for 7 days, followed 4 years. DOI 10.1371/journal.pone.0009836. PLOS article page read through a summarizing fetch tool. Tier A in principle but a very small sample with co-drugs; the authors give no significance tests.Very small sample; clarithromycin not separable.
- PubMed listing: clarithromycin intestinal microbiota diversity. — 18 records, first 10 read through the fetch tool; surfaced [6], [8], [9] and PMIDs 41024580 (Deng 2026, long-term clarithromycin and intestinal diversity in a lung-cancer prevention study, species not stated, NOT opened) and 31629863 (Zimmermann 2019 systematic review, NOT opened). Also tried and returned a bot-verification page: "clarithromycin gut microbiota healthy volunteers".
- PubMed listing: clarithromycin microbiome randomized. — 32 records, first 10 read; all were H. pylori eradication-rate trials or reviews, none a clarithromycin-specific microbiome analysis in the first 10 except by regimen (for example PMID 39479190 on bismuth quadruple therapy, which does not contain clarithromycin).
- Larsen EL, et al. Clarithromycin, trimethoprim, and penicillin and oxidative nucleic acid modifications in humans: randomised, controlled trials. Br J Clin Pharmacol 2017;83(8):1643-1653. — Two randomized placebo-controlled trials in healthy adults, one week of treatment. PMID 28185274, DOI 10.1111/bcp.13261, PMC5510073. Abstract read on three channels (OpenAlex works/pmid reconstructed abstract, a PubMed uid record, the journal-society page) through a fetch tool; per-arm N, dose and baseline values not retrieved (PMC bot-verification page, Wiley page failed). Tier A, clarithromycin arm.Full text not opened.
- PubMed listing: clarithromycin oxidative stress. — 43 records, first 10 read through the fetch tool; one human study (Larsen); the rest algae, cyanobacteria, mycobacteria and H. pylori in vitro work. 33 records not read.
- Woodhead JL, et al. Analyzing the mechanisms behind macrolide antibiotic-induced liver injury using quantitative systems toxicology modeling. Pharm Res 2019;36(3):48. — In vitro HepG2 assays plus DILIsym modeling of five macrolides. DOI 10.1007/s11095-019-2582-y, PMID 30734107. Springer full text read through a summarizing fetch tool; figures and tables (OCR values, IC50, ATP) not rendered. Tier B, clarithromycin tested.Numeric results in figures not retrieved.
- Salimi A, et al. Toxicity of macrolide antibiotics on isolated heart mitochondria: a justification for their cardiotoxic adverse effect. Xenobiotica 2016;46(1):82-93. — Isolated rat heart mitochondria exposed to erythromycin, azithromycin and clarithromycin. PMID 26068526, DOI 10.3109/00498254.2015.1046975. Reconstructed abstract (OpenAlex works/pmid record) paraphrased by the fetch tool; concentrations and numeric values not retrieved. Tier B, clarithromycin tested.Full text not opened. The OpenAlex record lists 2015 online; the journal volume is 2016.
- Yamamoto S, et al. The clarithromycin-binding proteins NIPSNAP1 and 2 regulate cytokine production through mitochondrial quality control. Sci Rep 2024;14:2354. — In vitro, NIPSNAP knockdown and double-knockout cells. PMID 38287119, DOI 10.1038/s41598-024-52582-7. Reconstructed abstract (OpenAlex works/pmid record) paraphrased by the fetch tool; no numbers. Tier B, clarithromycin tested.Abstract only.
- Kuretu A, et al. Elucidating the effect of drug-induced mitochondrial dysfunction on insulin signaling and glucose handling in skeletal muscle cell line (C2C12) in vitro. PLoS One 2024;19(9):e0310406. — In vitro, C2C12 cells, six drugs including clarithromycin, 24 hours, 25 to 100 micromolar. DOI 10.1371/journal.pone.0310406, PMID 39288128. Abstract via OpenAlex works/pmid record; clarithromycin-specific results from the PLOS full text through a fetch tool (significance flags only; the Methods text is internally inconsistent about exposure time). Tier B, clarithromycin tested.No numeric values retrieved.
- PubMed listing: clarithromycin mitochondria. — 10 records read through the fetch tool; surfaced [16][17][18][19] and pointers Qiao 2006 (PMID 17112418), Mathis 2005 (PMID 16048933), Panozzo 2017 (PMID 28888990, yeast) and Mathis 2004 (PMID 15110464); none of the pointer papers was opened.Pointers not opened.
- Svanström H, Pasternak B, Hviid A. Use of clarithromycin and roxithromycin and risk of cardiac death: cohort study. BMJ 2014;349:g4930. — Danish register cohort. PMID 25139799, DOI 10.1136/bmj.g4930. Reconstructed abstract (OpenAlex works/doi record) paraphrased by the fetch tool. Tier A for the outcome; the outcome is not a nutrient.BMJ page not opened.
- Jespersen CM, et al. Randomised placebo controlled multicentre trial to assess short term clarithromycin for patients with stable coronary heart disease: CLARICOR trial. BMJ 2006;332:22-27 (online 2005-12-08). — Randomized placebo-controlled trial, 4,373 randomized. PMID 16339220, DOI 10.1136/bmj.38666.653600.55. Reconstructed abstract (OpenAlex works/doi record) paraphrased by the fetch tool. Tier A for the outcome; the outcome is not a nutrient. The 10-year follow-up (Winkel 2015) was not opened; the label figure is used instead.BMJ page not opened.
- PubMed listing: clarithromycin hypokalemia OR hypomagnesemia QT. — 172 records, first 10 read; OR operator made it broad. Includes reviews by Tisdale 2016 (PMID 27212965) and Abo-Salem 2014 (PMID 24428853), read at listing-line level only. None showed clarithromycin lowering potassium or magnesium.Uninformative on direction.
- PubMed listing: clarithromycin hemolytic anemia. — 19 records, first 10 read; none identified clarithromycin as the cause of hemolysis.
- PubMed listing: clarithromycin anemia hemoglobin. — 23 records, first 10 read; H. pylori and iron-deficiency papers (including PMIDs 30939286, 11444468, 18775429) and the NIEHS mouse report (PMID 32479037).
- Rao GN, et al. NIEHS technical report on the reproductive, developmental, and general toxicity studies of AZT and clarithromycin combinations administered by gavage to Swiss CD-1 mice. NIEHS AIDS Therapeutics Toxicity Report, 2003. — Animal toxicity study. PMID 32479037. PubMed uid record abstract read through the fetch tool; OpenAlex had no record; no numeric counts. Tier B, clarithromycin tested alone and with zidovudine.Full report not opened.
- Hudak L, et al. An updated systematic review and meta-analysis on the association between Helicobacter pylori infection and iron deficiency anemia. Helicobacter 2017;22(1) (online 2016). — Systematic review and meta-analysis. PMID 27411077, DOI 10.1111/hel.12330. Reconstructed abstract (OpenAlex works/doi record) paraphrased by the fetch tool; total participants and regimens not retrieved. Tier C for clarithromycin (regimen level).Clarithromycin not separately stratified.
- Sarker SA, et al. Causal relationship of Helicobacter pylori with iron-deficiency anemia or failure of iron supplementation in children. Gastroenterology 2008;135(5):1534-1542. — Randomized trial, Bangladeshi children. PMID 18775429, DOI 10.1053/j.gastro.2008.07.030. OpenAlex metadata and keywords only; no abstract. Not used for any number.Abstract and results not retrieved.
- PubMed listing: clarithromycin copper. — 10 records, one page, read through the fetch tool; surfaced [30], [31], [32].
- Hamdan II. Comparative in vitro investigations of the interaction between some macrolides and Cu(II), Zn(II) and Fe(II). Pharmazie 2003;58(3):223-224. — In vitro. PMID 12685822. OpenAlex metadata and a PubMed uid record read: no abstract exists in the record; MeSH lists clarithromycin, azithromycin, roxithromycin, copper, iron and zinc. No result read.No readable result: not used as evidence.
- Götz JM, et al. Treatment of Helicobacter pylori infection favourably affects gastric mucosal superoxide dismutases. Gut 1997;40(5):591-596. — Clinical treatment study, 63 patients in two clarithromycin-containing regimens plus a persistent-infection group. PMID 9203935, DOI 10.1136/gut.40.5.591. Reconstructed abstract (OpenAlex works/pmid record) paraphrased by the fetch tool. Context only (effect of eradication).Abstract only.
- Sultana N, Arayne MS, Sabri R. Clarithromycin synergism with essential and trace elements. Pak J Pharm Sci 2002;15(1):35-54. — In vitro. PMID 16414867. Reconstructed abstract (OpenAlex works/pmid record): the title says clarithromycin but the abstract text refers to metal complexes of erythromycin; the full paper was not opened.Macrolide actually tested is unclear: excluded as evidence.
- PubMed listing: clarithromycin vitamin deficiency. — 13 records, first 10 read; H. pylori management reviews and vitamin D and eradication-response papers (PMIDs 33616339, 30619936, 34094742; vitamin D status as a predictor of eradication, a nutrient-to-treatment direction). No record showed clarithromycin lowering any vitamin or mineral.
- Consumer drug pages: Drugs.com clarithromycin food interactions and patient monograph; MedlinePlus clarithromycin. — Tier D, read through a fetch tool to audit circulating claims. None claims nutrient depletion; MedlinePlus advises continuing the normal diet and names low magnesium or potassium only as a condition to disclose; Drugs.com notes extended-release tablets should be taken with food.Also https://www.drugs.com/mtm/clarithromycin.html and https://www.drugs.com/food-interactions/clarithromycin.html
- What deficiencies do antibiotics cause? A guide to nutrient depletion (medx.it.com). — Tier D consumer page; does not mention clarithromycin or macrolides. Origin of the generic vitamin K, B vitamin and mineral claims.
- Edlund C, Beyer G, Hiemer-Bau M, Ziege S, Lode H, Nord CE. Comparative effects of moxifloxacin and clarithromycin on the normal intestinal microflora. Scand J Infect Dis 2000;32(1):81-85. — Crossover study, 12 healthy men. PMID 10716083, DOI 10.1080/00365540050164272. Reconstructed abstract (OpenAlex works/pmid record) paraphrased by the fetch tool; author list partly garbled in the record; counts and P-values not retrieved. Tier A, clarithromycin 500 mg twice daily.Abstract only.
- Brismar B, Edlund C, Nord CE. Comparative effects of clarithromycin and erythromycin on the normal intestinal microflora. Scand J Infect Dis 1991;23(5):635-642. — Comparative study, 20 healthy volunteers (10 per group). PMID 1837385, DOI 10.3109/00365549109105189. Reconstructed abstract (OpenAlex works/pmid record) paraphrased by the fetch tool; counts and recovery times not retrieved. Tier A, clarithromycin 250 mg every 12 hours.Abstract only; active comparator, no placebo.
- Matute AJ, et al. Double-blind, placebo-controlled study comparing the effect of azithromycin with clarithromycin on oropharyngeal and bowel microflora in volunteers. Eur J Clin Microbiol Infect Dis 2002;21(6):427-431. — Volunteer study. PMID 12111597, DOI 10.1007/s10096-002-0728-y. OpenAlex metadata only: the record has no abstract and no full text; a PubMed listing showed the title and a truncated snippet. Not used for any number.Abstract and results not retrieved.
- PubMed listing: clarithromycin ferritin. — 17 records, first 10 read through the fetch tool; H. pylori eradication papers (PMIDs 36133500, 30939286, 15357684, 18775429, 24130381, 15855306, 23257355) and unrelated infection reports; none flagged for an effect of clarithromycin itself on iron status. Snippets only.Listing-line level only.
