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Ciprofloxacin

fluoroquinolone (quinolone antibacterial)

Also sold as Cipro.

Findings for this medication

Research about this medication, graded for how strongly each finding can be attributed to it. Nothing here describes your own levels.

Ciprofloxacin has no classical depletion machinery. It is well absorbed (oral bioavailability 70 to 80%), 40 to 50% is excreted unchanged in urine with another 20% to 35% in feces, and its one named enzyme effect is inhibition of CYP1A2, which raises levels of caffeine, theophylline and tizanidine rather than speeding loss of any nutrient [3][1]. The dominant nutrient relationship runs the other way: iron, calcium, magnesium, aluminum and zinc bind the antibiotic in the gut and lower its absorption. Human crossover studies give an AUC reduction of 46% to 63% with oral iron (Kara, Lehto, Polk), about 40% with calcium carbonate and about 50% with calcium polycarbophil, 30% to 36% with milk or yogurt taken alone, 22% with a multivitamin containing zinc, and about 85% with aluminum or aluminum/magnesium antacids taken within 5 to 10 minutes (77% at 2 hours) [9][8][7][11][14][13][12]. These are filed as nutrient-to-drug timing interactions with the label separation interval of 2 hours before or 6 hours after, not as depletion, and all four sit in the yellow tier under Hard Rule 4 even though the pharmacokinetic evidence behind iron and calcium is strong (three independent Tier A crossover studies each); magnesium and zinc were never isolated in a human study [1].

fluoroquinolone (quinolone antibacterial) · ATC J01MA02 (WHO ATC/DDD Index [4]) · also sold as Cipro and others [6] · reviewed 2026-10-08. This describes research about the medication. It does not say anything about your own levels or health.

How to read the evidence grades

These colours describe how strongly a finding can be attributed to the medication in the research. They are not a severity score and they say nothing about your own health.

Grades describe how strongly a finding can be attributed to Ciprofloxacin in the research — not how common it is, how serious it would be, and not anything about you personally.

Red — Severe
Two or more independent Tier A sources, this drug in the cohort, the nutrient directly measured, consistent direction, clinically meaningful magnitude, a named mechanism, no substantial contradicting Tier A evidence.
Orange — Moderate
At least one Tier A source with this drug in the cohort showing a real but bounded deficit: an exposure window, a subgroup, low frequency, or a functional rather than circulating deficit.
Yellow — Low
Mechanistic plausibility only (Tier B), or class extrapolation (Tier C) with no drug-specific human status data; also used for context flags and interactions running the other direction.
Not graded — disclosed evidence gap
Nothing has been measured here, so this finding cannot be graded. That does not establish either safety or harm, and it is not the same as a White result.Source definition: Not gradeable under the rules above because nothing has been measured. Published as a documented gap, never as reassurance that there is no effect.

What the research found

Calcium and dairy: calcium carbonate, calcium polycarbophil and milk or yogurt taken together lower ciprofloxacin absorption (nutrient-to-drug timing interaction)

Yellow — Low

See study details

Three independent healthy-volunteer studies with calcium sources (calcium carbonate, calcium polycarbophil, milk and yogurt) show 30% to 50% lower ciprofloxacin exposure; the calcium affects the drug, so this is filed as a yellow timing interaction (Hard Rule 4) and no calcium deficiency is implied.

Full detail and limits

What the grade means here: Mechanistic plausibility only (Tier B), or class extrapolation (Tier C) with no drug-specific human status data; also used for context flags and interactions running the other direction. Yellow

Limits on what this shows

  • Null findings: The label states that a meal containing dairy or calcium-fortified juice is acceptable, so ordinary meals are not equivalent to the liquid-dairy-alone conditions of the Neuvonen study [1]. No study retrieved shows no effect of calcium carbonate.
  • At-risk subgroups: People using calcium supplements, calcium-containing antacids or dairy snacks taken alone with a dose; a lower peak matters most for moderately susceptible organisms (Neuvonen conclusion) [13].

Direction

Nutrient-to-drug TIMING INTERACTION, filed yellow under Hard Rule 4 (the nutrient affects the drug, so it is a timing interaction with a separation interval, not a depletion). Nutrient-to-drug (chelation and binding in the gut). Not calcium depletion.

Regulatory status

Label section 2.4: avoid taking ciprofloxacin with dairy products (milk, yogurt) or calcium-fortified juices alone because absorption may decrease; a meal containing them is acceptable; calcium-containing products fall under the 2 hours before or 6 hours after rule [1][2][3]. NIH calcium fact sheet names ciprofloxacin: "Taking the antibiotic 2 hours before or 2 hours after calcium supplements prevents this effect" [19]. The 2 hour after wording on that fact sheet differs from the label 6 hour wording; the label governs.

Population evidence

Frost 1992 [11]: 12 healthy volunteers, ciprofloxacin 750 mg, three-way randomized crossover; four 850 mg calcium carbonate tablets 5 minutes before the dose gave relative bioavailability of about 60% of control (about 40% lower, calculated). Abstract read as a PubMed listing and an OpenAlex reconstruction (two retrievals agree). Neuvonen 1991 [13]: 7 healthy volunteers, ciprofloxacin 500 mg with water, milk or yogurt in randomized crossover; peak concentration reduced 36% by milk and 47% by yogurt (P < 0.05); total AUC reduced 30% to 36% (reported as a combined range). Abstract read via a PubMed listing summary. Kato 2002 [14]: crossover in volunteers, ciprofloxacin 400 mg with 1200 mg calcium polycarbophil: AUC0-12 lowered by roughly 50%; number of volunteers not stated in the record; rat arm with calcium chloride lowered AUC and Cmax by roughly 60%. OpenAlex reconstructed abstract only.

Mechanism

Named: chelate complex formation between calcium and ciprofloxacin; the Kato authors conclude this directly [14].

Separation interval

Label: ciprofloxacin at least 2 hours before or 6 hours after products containing calcium, and dairy or calcium-fortified juice taken alone (a meal containing them is acceptable) [1]. This is the action the entry supports; it is not a nutrient recommendation.

Counter-evidence held on record

Counter-evidence and confounding All three studies are small (7, 12 and an unreported n) and measured drug exposure, not infection outcomes. The Neuvonen AUC range was combined for milk and yogurt in the abstract, so separate AUC values were not seen. Framing caution This is a spacing instruction for the antibiotic, not a calcium deficiency. Nothing here advises avoiding dairy in general or changing calcium intake; follow the label timing from the prescriber or pharmacist. No calcium dose is recommended.

Magnesium and aluminum antacids: Maalox and aluminum hydroxide taken just before ciprofloxacin cut absorption to about 15% of control; magnesium not isolated from aluminum (nutrient-to-drug timing interaction)

Yellow — Low

See study details

Two human crossover studies from one research group show that aluminum/magnesium antacids and aluminum hydroxide lower ciprofloxacin absorption by about 85% when taken within 5 to 10 minutes (about 77% at 2 hours); the effect fades with longer spacing, but magnesium alone was not tested in a human study retrieved. Filed as a yellow timing interaction (Hard Rule 4), not a magnesium depletion.

Full detail, limits and 1 references

What the grade means here: Mechanistic plausibility only (Tier B), or class extrapolation (Tier C) with no drug-specific human status data; also used for context flags and interactions running the other direction. Yellow

Limits on what this shows

  • Null findings: Antacid 6 hours before or 2 hours after ciprofloxacin had no effect (Nix) [12]. No human study with a magnesium salt alone was retrieved; reviews listing Mg/Al antacids at 50% to 90% lower absorption are Tier C here [15].

Direction

Nutrient-to-drug TIMING INTERACTION, filed yellow under Hard Rule 4 (the nutrient affects the drug, so it is a timing interaction with a separation interval, not a depletion). Nutrient-to-drug: Magnesium (and aluminum, a non-nutrient) bind ciprofloxacin in the gut. Not magnesium depletion.

Regulatory status

Label section 2.4: administer ciprofloxacin "at least 2 hours before or 6 hours after magnesium/aluminum antacids" [1]. NIH magnesium fact sheet names ciprofloxacin and gives "at least 2 hours before or 4 to 6 hours after a magnesium-containing supplement" [17].

Population evidence

Nix 1989 [12]: crossover studies in healthy male volunteers (n not stated in the abstract), 30 mL Maalox (aluminum and magnesium hydroxides): relative bioavailability 15.1% of control when ciprofloxacin followed the antacid by 5 to 10 minutes, 23.2% at 2 hours and 70% at 4 hours; antacid 6 hours before or 2 hours after ciprofloxacin had no effect (P < 0.05 for the decrease). AUC and Cmax were not reported in the abstract. PubMed listing summary only. Frost 1992 [11]: 12 healthy volunteers, ciprofloxacin 750 mg; three 600 mg aluminum hydroxide tablets 5 minutes before: relative bioavailability about 15% of control (about 85% lower, calculated); urinary recovery about one-fourth.

Mechanism

Named: chelation by multivalent cations; an in vitro study reports a 1:1 ciprofloxacin-Mg2+ complex with smaller antibacterial inhibition zones (PMID 19062475; listing line only) [16].

Independence

Nix and Frost share an author (Frost RW) and a research group, so they are treated as related rather than fully independent; and magnesium was never tested alone.

Separation interval

Label: ciprofloxacin at least 2 hours before or 6 hours after products containing magnesium or aluminum antacids and sucralfate [1]. This is the action the entry supports; it is not a nutrient recommendation.

Counter-evidence held on record

Counter-evidence and confounding Both studies used antacid doses taken within minutes of the antibiotic; real-world spacing reduces the effect. Abstract-level numbers only; sample size for Nix was not printed. Framing caution A spacing rule for the antibiotic, not a magnesium deficiency or a reason to change magnesium intake. No magnesium dose is recommended here.

Zinc: a multivitamin with zinc lowered ciprofloxacin exposure by about 22% in one crossover study; zinc itself not isolated (nutrient-to-drug timing interaction)

Yellow — Low

See study details

One 12-volunteer crossover study found 22% lower ciprofloxacin AUC with a once-daily multivitamin with zinc; the responsible component was not identified, but the label and NIH fact sheet name zinc. Filed as a yellow timing interaction (Hard Rule 4), not a zinc depletion.

Full detail and limits

What the grade means here: Mechanistic plausibility only (Tier B), or class extrapolation (Tier C) with no drug-specific human status data; also used for context flags and interactions running the other direction. Yellow

Limits on what this shows

  • Null findings: None retrieved. A second independent zinc study was not found in the PubMed listings that opened.

Direction

Nutrient-to-drug TIMING INTERACTION, filed yellow under Hard Rule 4 (the nutrient affects the drug, so it is a timing interaction with a separation interval, not a depletion). Nutrient-to-drug. Not zinc depletion.

Regulatory status

Label section 2.4 lists "other products containing calcium, iron or zinc"; the section 7 multivalent cation row applies [1]. NIH zinc fact sheet: quinolone antibiotics (such as Cipro) "might interact with zinc in the gastrointestinal tract"; take the antibiotic "at least 2 hours before or 4 to 6 hours after the zinc supplement" [18].

Population evidence

Polk 1989 [7]: 12 healthy men; AUC with a multivitamin with zinc (7 days, dose given with the last tablet) 11.3 +/- 2.4 versus 14.5 +/- 2.3 ug.h/mL alone (about 22% lower, calculated); the authors write that "the responsible component of multivitamins with zinc requires additional study". The same paper reports a larger iron effect (see the Iron entry).

Mechanism

Plausible and named: chelation by divalent cations (label grouping). Not shown for zinc alone in a human PK study retrieved.

Separation interval

Label: ciprofloxacin at least 2 hours before or 6 hours after products containing calcium, iron or zinc and multivitamins [1]. This is the action the entry supports; it is not a nutrient recommendation.

Counter-evidence held on record

Counter-evidence and confounding The multivitamin contained other cations, so zinc may not be the active component. One study only. Framing caution A spacing rule for the antibiotic, not a zinc deficiency. No zinc dose is recommended here.

Blood glucose (hypoglycemia and hyperglycemia): label warning and conflicting cohorts; a clinical outcome and drug-safety signal, not a nutrient deficiency

Yellow — Low

See study details

The label warns of symptomatic hypoglycemia and hyperglycemia, with severe cases resulting in coma or death; one large diabetic-cohort study found higher odds with ciprofloxacin and a Veterans Affairs cohort found none.

Full detail and limits

What the grade means here: Mechanistic plausibility only (Tier B), or class extrapolation (Tier C) with no drug-specific human status data; also used for context flags and interactions running the other direction. Yellow

Limits on what this shows

  • Null findings: The VA cohort found no significant ciprofloxacin excess [32]; levofloxacin and gatifloxacin were significant there (levofloxacin hypoglycemia OR 2.1, gatifloxacin 4.3), so the class signal is driven by other members in that cohort.

Direction

Outcome entry. Blood glucose is a clinical measure, not a nutrient, so this is filed as a safety signal, not a deficiency or retention finding (Hard Rule 2).

Regulatory status

Label section 5.19: fluoroquinolones including ciprofloxacin "have been associated with disturbances of blood glucose, including symptomatic hyperglycemia and hypoglycemia", mainly in diabetic patients on oral hypoglycemic agents or insulin; "Severe cases of hypoglycemia resulting in coma or death have been reported"; monitor glucose and stop ciprofloxacin if hypoglycemia occurs [1][2]. The label also lists sulfonylureas (glyburide, glimepiride) in the interaction text [1].

Population evidence

Chou 2013 [33]: population-based inception cohort of diabetic patients in Taiwan (total 78,433 across antibiotic groups), propensity-adjusted, versus macrolides: ciprofloxacin hyperglycemia adjusted OR 1.87 (95% CI 1.20 to 2.93) and hypoglycemia adjusted OR 1.46 (1.07 to 2.00); moxifloxacin higher (hypoglycemia 2.13). Aspinall 2009 [32]: Veterans Affairs retrospective inception cohort, ciprofloxacin versus azithromycin among patients with diabetes: hypoglycemia OR 1.1 (95% CI 0.6 to 2.0), hyperglycemia OR 1.0 (0.6 to 1.8); crude severe-event rates per 1,000 patients 0.10 and 0.12 with ciprofloxacin versus 0.07 and 0.10 with azithromycin. Both read as PubMed listing summaries; ciprofloxacin-specific n not printed.

Mechanism

Not established in the sources read; the label gives none for ciprofloxacin. Interaction with sulfonylureas is named by the label [1].

Counter-evidence held on record

Counter-evidence and confounding Confounding by indication (infection itself changes glycemia), different comparators (macrolides versus azithromycin), definitions and populations explain part of the disagreement. Framing caution Safety signal for people with diabetes, especially on insulin or sulfonylureas; discuss glucose monitoring with the prescriber. Not a nutrient finding and no dietary or supplement change is implied.

Magnesium and tendon or cartilage injury: juvenile dog and rat studies link ciprofloxacin and magnesium deficiency to similar tendon and cartilage lesions; no human magnesium measurement

Yellow — Low

See study details

In juvenile animals, ciprofloxacin and a magnesium-deficient diet produce similar tendon and cartilage changes and magnesium supplementation reduced ciprofloxacin lesions in rats; no human study measured magnesium in ciprofloxacin tendinopathy.

Full detail, limits and 2 references

What the grade means here: Mechanistic plausibility only (Tier B), or class extrapolation (Tier C) with no drug-specific human status data; also used for context flags and interactions running the other direction. Yellow

Limits on what this shows

  • Null findings: No human or animal measurement of total or ionized magnesium in ciprofloxacin-treated tendon was retrieved.

Direction

Proposed local functional magnesium deficit in cartilage and tendon caused by chelation (mechanistic, animal). The tendinopathy itself is a clinical outcome, not a magnesium deficiency (Hard Rule 2). No claim that ciprofloxacin lowers circulating magnesium.

Regulatory status

Label section 5.2: fluoroquinolones including ciprofloxacin are associated with tendinitis and tendon rupture; risk factors include age over 60, corticosteroids, kidney, heart or lung transplant, strenuous physical activity, renal failure and previous tendon disorders; stop ciprofloxacin at the first sign of tendon pain, swelling or inflammation [1]. Magnesium is not named in that text.

Population evidence

None in humans.

Animal evidence (Tier B)

Shakibaei 2001 [43]: juvenile dogs (10 to 11 weeks, 3 per group), ciprofloxacin 30 or 200 mg/kg orally for 5 days, or a magnesium-deficient diet for 6 weeks: Achilles tendon collagen I fell from 3,190 +/- 217 (controls) to 1,890 +/- 468, 1,695 +/- 135 and 2,053 +/- 491 respectively; low-dose ciprofloxacin lowered elastin 73%, fibronectin 88% and beta-1 integrin 96%; the authors propose magnesium-antagonistic effects. Pfister 2007 [44]: 24-day-old Wistar rats (12 per group), ciprofloxacin 600 mg/kg subcutaneously twice: cartilage lesions (17 in the normal-diet group) fell 41% with vitamin E, 65% with magnesium and 82% with both. Both read as PubMed listing summaries.

Related (not ciprofloxacin)

Ofloxacin in juvenile rats: a magnesium-deficient diet produced lesions like ofloxacin arthropathy (Stahlmann 1995, serum magnesium 0.18 vs 0.82 mmol/L; PMID 8540708) and increased the frequency of degenerative tenocytes (Shakibaei 2000, PMID 10639347) and, at a dose that caused no lesions alone, 10 of 12 magnesium-deficient rats developed them while ofloxacin did not change total tissue magnesium (Lozo 2002, PMID 12019086). These are Tier C for ciprofloxacin (CLASS EXTRAPOLATION): ofloxacin was the drug tested and ciprofloxacin was in the cohort only in the two studies above [45][46].

Mechanism

Named hypothesis: chelation of magnesium in cartilage and tendon reduces functionally available magnesium; the in vitro ciprofloxacin-magnesium complex is described elsewhere [16]. The rat data show tissue total magnesium unchanged by an ofloxacin dose that still enhanced lesions, so a measured magnesium loss is not shown.

Counter-evidence held on record

Counter-evidence and confounding Juvenile animals at very high doses (30 to 600 mg/kg); the human risk factors in the label (age, corticosteroids, transplant, exercise, renal failure) are competing explanations that do not involve magnesium. Framing caution An animal mechanistic hypothesis. Not a recommendation to take magnesium for tendon protection (and magnesium products lower ciprofloxacin absorption, see the Magnesium and aluminum antacid entry). Report tendon pain to the prescriber promptly.

Potassium and magnesium (QT): label names uncorrected hypokalemia and hypomagnesemia as QT risk factors; ciprofloxacin is not shown to lower either (nutrient-status-to-drug-risk direction)

Yellow — Low

See study details

Low potassium or magnesium raises the arrhythmia risk of QT-prolonging drugs including ciprofloxacin per the label, but no source found shows that ciprofloxacin itself lowers potassium or magnesium.

Full detail, limits and 1 references

What the grade means here: Mechanistic plausibility only (Tier B), or class extrapolation (Tier C) with no drug-specific human status data; also used for context flags and interactions running the other direction. Yellow

Limits on what this shows

  • Null findings: None for ciprofloxacin lowering potassium or magnesium; no measurement found.

Direction

Pre-existing electrolyte status modifies the drug risk (a safety context flag). It is not depletion of potassium or magnesium by ciprofloxacin (Hard Rules 2 and 4).

Regulatory status

Label section 5.12: fluoroquinolones including ciprofloxacin "have been associated with prolongation of the QT interval"; avoid in patients with known QT prolongation, "uncorrected electrolyte imbalance, such as hypokalemia or hypomagnesemia", or interacting antiarrhythmic and other QT-prolonging drugs; torsade de pointes has been reported postmarketing [1][2]. Drugs.com and GoodRx patient pages list low blood potassium or magnesium as a QT risk factor [21][22].

Population evidence

A PubMed listing for ciprofloxacin, QT, hypokalemia, hypomagnesemia and torsade returned one record: a case report of ciprofloxacin- and hypocalcemia-induced torsade in a 76-year-old man with acute-on-chronic renal failure, in whom QT prolongation was corrected by treating hypocalcemia (Daya 2004, PMID 14704599) [51]. The electrolyte in that case was calcium, not potassium or magnesium. No cohort with ciprofloxacin-specific QT estimates was retrieved.

Mechanism

Hypokalemia and hypomagnesemia are named in the label as predisposing to torsade; ciprofloxacin QT prolongation itself is a class pharmacology effect (hERG-channel mechanism not retrieved from the sources read).

Counter-evidence held on record

Counter-evidence and confounding Renal failure, dialysis and co-medication are competing explanations in the one case report; the label statement is class-wide for the QT warning. Framing caution A safety context flag. Not a reason to take potassium or magnesium supplements (magnesium products also lower ciprofloxacin absorption). Any electrolyte correction belongs to the prescriber.

Vitamin K and INR: label advises frequent prothrombin time/INR monitoring with warfarin; one case report suggests possible vitamin K deficiency exacerbation; vitamin K never measured in a cohort

Yellow — Low

See study details

The label directs INR monitoring when ciprofloxacin is given with warfarin, and a single case report speculates that ciprofloxacin may have worsened a vitamin K deficiency; no cohort measured vitamin K, PIVKA or menaquinone.

Full detail and limits

What the grade means here: Mechanistic plausibility only (Tier B), or class extrapolation (Tier C) with no drug-specific human status data; also used for context flags and interactions running the other direction. Yellow

Limits on what this shows

  • Null findings: No cohort or trial of ciprofloxacin on vitamin K status or PIVKA was found in the listing opened.

Direction

Drug-drug interaction signal and a speculative flora-linked mechanism. Not a dietary vitamin K deficiency; supplementing vitamin K would oppose warfarin (Hard Rules 2 and 4).

Regulatory status

Label: "Monitor prothrombin time and INR frequently during and shortly after co-administration" with warfarin [1]. Vitamin K is not mentioned in the label text read.

Population evidence

Tasos 2022 [49]: one adult man with cardiofaciocutaneous syndrome, intestinal pseudo-obstruction and low factors II, VII and X without warfarin, treated with vitamin K; the authors say the deficiency was "possibly exacerbated by subsequent ciprofloxacin use" for bacterial overgrowth (case report, listing summary only; causality unproven).

Mechanism

Proposed, not demonstrated: fewer vitamin K-producing intestinal bacteria. The gut microbiome entry shows diversity loss but not a vitamin K change.

Counter-evidence held on record

Counter-evidence and confounding Intestinal pseudo-obstruction malabsorption, infection, reduced intake and warfarin protein-binding or CYP1A2 effects are competing explanations; one case is weak evidence. Framing caution Monitoring prompt for anticoagulated patients, not a vitamin K deficiency claim. Do not recommend vitamin K supplements.

Folate: in one rat study ciprofloxacin prevented an ethanol-induced fall in colonic mucosal folate (reverse direction, protective, animal only)

Yellow — Low

See study details

The one folate source found points opposite to depletion: in rats given ethanol, ciprofloxacin kept colonic mucosal folate from falling by lowering microbial acetaldehyde.

Full detail and limits

What the grade means here: Mechanistic plausibility only (Tier B), or class extrapolation (Tier C) with no drug-specific human status data; also used for context flags and interactions running the other direction. Yellow

Limits on what this shows

  • Null findings: No human folate measurement in ciprofloxacin users was found.

Direction

Reverse direction (drug-associated higher or preserved colonic folate in a specific ethanol model). Not a deficiency; no supplementation implication.

Regulatory status

Folate is not mentioned in the label text read [1].

Population evidence

None in humans.

Animal evidence (Tier B)

Homann 2000 [50]: 20 rats given ethanol 3 g/kg twice daily for two weeks with or without ciprofloxacin, 20 saline controls with or without ciprofloxacin: ciprofloxacin cut intracolonic acetaldehyde from 387 +/- 185 uM to 21 +/- 4 uM; alcohol lowered colonic mucosal folate 48% and ciprofloxacin prevented that drop; erythrocyte, serum and small-intestinal folate were not changed by alcohol. Listing summary only. Ciprofloxacin dose not stated in the summary.

Mechanism

Proposed by the authors: bacterial acetaldehyde degrades folate; suppressing bacteria prevents it.

Counter-evidence held on record

Counter-evidence and confounding A rat ethanol model, local colonic folate only, and no humans; it does not show that ordinary ciprofloxacin use changes folate status in either direction. Framing caution No folate supplement or change is implied; this is a reverse-direction mechanistic note.

B vitamins (thiamine, B6, B12)

Not graded — disclosed evidence gap

See study details

No evidence was found that ciprofloxacin alters thiamine, vitamin B6 or vitamin B12 status, and no circulating claim naming these vitamins for ciprofloxacin was found. (Folate and vitamin K are graded separately.)

Full detail and limits

What the grade means here: Nothing has been measured here, so this finding cannot be graded. That does not establish either safety or harm, and it is not the same as a White result. Ungraded

Limits on what this shows

  • Why no grade: Dual condition met: no Tier B or C source found to support even a yellow grade, and no circulating consumer claim found to rebut. This is a disclosed gap, not a finding of safety. Re-check with open-web search restored for consumer claims, and a PubMed query on "ciprofloxacin" with "vitamin B deficiency" and "peripheral neuropathy" (fluoroquinolone neuropathy cohorts are the one place a B-vitamin measurement could sit).

What was searched

Label text read (no B vitamin mentioned) [1]. PubMed listing "ciprofloxacin vitamin deficiency": six records, none concerning B1, B6 or B12 (the relevant ones are the vitamin K case report and the rat folate study graded separately; a rifabutin osteomalacia case and a prenatal exposure study were off topic) [49][50]. Consumer pages: Drugs.com and GoodRx name no vitamin depletion [21][22]; Wikipedia fluoroquinolone toxicity makes no vitamin claim [52]. NIH fact sheets for magnesium, zinc, calcium and iron were read for interactions only.

Repair search (2026-10-08)

Vitamin-specific PubMed listings, spaced several minutes apart: "ciprofloxacin cobalamin" (9 records: drug-delivery formulations, a B12-producing bacterium, a prescribing survey; none measuring B12 status), "ciprofloxacin \"vitamin B6\"" (3 records: a fluorescent probe, a tuberculosis-in-pregnancy review, a bacterial susceptibility paper; none measuring B6 status), "ciprofloxacin thiamine" (2 records: a pyruvate dehydrogenase sepsis review that lists thiamine and ciprofloxacin among agents discussed, and a pneumococcal genome paper; neither measures thiamine status) [56]. NIH Office of Dietary Supplements fact sheets for B6, B12 and thiamin: the medication interaction sections name no quinolone or ciprofloxacin [55]. Crossref title searches returned only unrelated chemistry and textbook records (one query errored, one was rate limited). Open-web search (WebSearch) was exhausted for the turn, so no consumer-claim search could be run beyond the pages fetched directly. Two attempts at the "ciprofloxacin vitamin B12 deficiency" and "ciprofloxacin pyridoxine" PubMed listings were rate limited (429) and not read.

Channel outcomes

Mostly a genuine gap: three vitamin-specific PubMed listings that opened returned no status measurement, the NIH fact sheets name no fluoroquinolone, and no consumer page asserted a ciprofloxacin B-vitamin loss. Residual tooling limits: no open-web search, and PubMed listings are rate limited so a full-text-level or MeSH-level sweep was not possible.

The five body-system areas

Each finding is counted once, in a single area. Where a study is mentioned in a second area it is context only.

Mitochondrial Burden

Each finding below is counted once, in this area only.

Mitochondrial burden: ciprofloxacin lowers mitochondrial DNA content and membrane potential in cultured mammalian cells at concentrations well above those in the label examples; no human tissue measurement

Yellow — Low

See study details

Several in vitro studies show ciprofloxacin impairing mtDNA replication and mitochondrial membrane potential in human and mouse cells, but at 25 to 120 ug/mL, and no cohort measured mitochondrial function in treated people.

Full detail, limits and 1 references

What the grade means here: Mechanistic plausibility only (Tier B), or class extrapolation (Tier C) with no drug-specific human status data; also used for context flags and interactions running the other direction. Yellow

Limits on what this shows

  • Null findings: Acute bioenergetic readouts (NAD(P)H, ATP/ADP) unchanged in mouse islets [38]; basal oxygen consumption rose rather than fell in MIO-M1 cells [37]; Hangas measured no respiration or ATP [35]; Sailer 2025 found respiration effects only at concentrations of about 100-fold or more above therapeutic peaks and complex IV unaffected [54].
  • Dose relevance: Concentrations used (25 to 120 ug/mL; 0.3 mM is about 100 ug/mL) are far above peak serum levels after ordinary oral doses; the label 12.3 pharmacokinetic text was not available in the fetched label pages, so no clinical peak concentration is quoted here.

Direction

Drug-to-cell injury (a mechanistic toxicity signal). Not a nutrient deficiency and no supplementation implication (Hard Rule 2).

Regulatory status

No mitochondrial statement was found in the label text read [1]. Tendinitis, peripheral neuropathy and other serious reactions are listed outcomes, not mitochondrial findings.

Population evidence

None in humans. A review lists ciprofloxacin among drugs that inhibit hepatic mtDNA replication (Fromenty 2020; review, cited studies not opened) [42].

In vitro and cell evidence (Tier B)

Hangas 2018 [35]: human HeLa and HEK293 cells and mouse C2C12 myotubes, ciprofloxacin 80 ug/mL; mtDNA copy number fell 18% within 3 days in HeLa; replication initiation nearly completely inhibited in myotubes (OH-bubble intermediates 18% and y-shaped intermediates 33% of control); mechanism: inhibition of Top2 (Top2 beta in myotubes). ATP, respiration and membrane potential were not measured; the paper does not relate 80 ug/mL to clinical levels. Read via a summarizing fetch of the journal page. Kozieł 2006 [36]: human Jurkat cells, 25 ug/mL for several days: mtDNA content fell 60%, respiratory chain inhibition and membrane potential loss followed (listing summary only). Salimiaghdam 2022 [37]: human retinal MIO-M1 cells, 30, 60 and 120 ug/mL: 120 ug/mL lowered cellular metabolism, membrane potential and mtDNA copy number; basal oxygen consumption rose (listing summary only). Lowes 2009 [39]: normal human Achilles tendon cells, 0 to 0.3 mM: loss of mitochondrial membrane potential, prevented by the mitochondria-targeted antioxidant MitoQ (listing summary only). Liu 2026 [41]: human cortical organoids, chronic low-dose two-week exposure: excess ROS and lower membrane potential (abstract-level; concentration not in the abstract). Ghaly 2014 [38]: mouse pancreatic islets: ciprofloxacin did not significantly change glucose-induced NAD(P)H or ATP/ADP ratio, though it changed mitochondrial morphology and reduced insulin granules at 10 and 100 uM (listing summary only). Sailer 2025 [54]: permeabilized human HEK 293T cells, high-resolution respirometry, ciprofloxacin titrated 0.01 to 2 mg/mL (serum peaks under therapy 2.4 to 5 ug/mL): leak respiration rose (more than 2-fold at 1 mg/mL in the Discussion; the Results text says 2 mg/mL, a disagreement within the paper); N-linked OXPHOS capacity fell 39% when the drug was added in the leak state (16% when added in the OXPHOS state); NS-linked OXPHOS fell 26% (18%); NS electron transfer capacity fell 37% (25%); no significant direct effect on complex IV; ATP not measured; membrane potential could not be measured because ciprofloxacin interfered with the safranin dye; the 0.1 N HCl solvent itself slightly lowered respiration. The authors say the 1 mg/mL effect is far above therapeutic serum peaks and may matter only in high-dose or overdose situations. Read from the MDPI article page through a summarizing fetch tool; Tier B.

Cohort test: Kalghatgi 2013

Kalghatgi et al. (Sci Transl Med 2013; PMID 23825301) tested three bactericidal classes (quinolones, aminoglycosides, beta-lactams) in mammalian cells and mice, with mitochondrial dysfunction, ROS and oxidative damage reversed by N-acetylcysteine. The abstract names the classes, not individual drugs; the full text could not be opened (PMC returned a bot-verification page; Science returned 403), so this review could NOT confirm that ciprofloxacin was among the drugs tested. It is therefore used only as CLASS EXTRAPOLATION (quinolone class), capped at yellow, and ciprofloxacin is not claimed to be in the cohort [34].

Mechanism

Named: inhibition of mitochondrial topoisomerase 2 (replication initiation) and, in other cell studies, ROS and membrane potential loss [35][39].

Counter-evidence held on record

Counter-evidence and confounding Cell lines, supraphysiologic concentrations, short exposures and no human tissue. Mixed bioenergetic outcomes (null ATP/ADP, higher oxygen consumption) argue against reading structural findings as functional impairment. Framing caution A mechanistic signal, not a deficiency and not a finding that therapeutic courses damage mitochondria in people. No antioxidant or mitochondrial supplement is recommended by this entry.

Oxidative Stress

Each finding below is counted once, in this area only.

Oxidative stress: higher ROS in cultured human cells exposed to ciprofloxacin; mixed direction in one cell line; class-level mouse blood markers not confirmed for this drug

Yellow — Low

See study details

Cell studies show ciprofloxacin raising reactive oxygen species (up to about 3-fold in human tendon cells) with protection by a mitochondria-targeted antioxidant, but no human or animal marker study with ciprofloxacin was retrieved.

Full detail and limits

What the grade means here: Mechanistic plausibility only (Tier B), or class extrapolation (Tier C) with no drug-specific human status data; also used for context flags and interactions running the other direction. Yellow

Limits on what this shows

  • Null findings: In MIO-M1 cells ROS was lower at 72 hours at 120 ug/mL with ciprofloxacin (opposite direction) [37]. Hangas measured no ROS [35]. In vivo animal null: Jijie 2023 [57] exposed zebrafish to ciprofloxacin alone (5 mg/L, 96 hours, n = 5 per group) and reported no effect on MDA, SOD or GPx (numbers are in a figure not seen); only the lead-containing mixtures changed them (Tier B, OpenAlex abstract and MDPI article page via a summarizing tool).

Direction

Drug-to-cell redox burden (mechanistic). Not an antioxidant-nutrient deficiency.

Regulatory status

No oxidative stress statement in the label text read [1].

Population evidence

None in humans. No human trial or cohort measuring MDA, glutathione or antioxidant enzymes in ciprofloxacin users was retrieved; the one in vivo marker study found (zebrafish) is a null (see Null findings).

Cell evidence (Tier B)

Lowes 2009 [39]: normal human Achilles tendon cells, 0 to 0.3 mM for 24 hours and 7 days: up to a 3-fold rise in the rate of DCF oxidation (ROS marker), reduced by 1 uM MitoQ or idebenone. Zeng 2024 [40]: primary human aortic smooth muscle cells, 110 ug/mL for 72 hours with angiotensin II: ROS higher (MitoSOX and DCFH-DA), membrane potential lower, AMPK phosphorylation suppressed; an AMPK activator partly reversed it. Liu 2026 [41]: cortical organoids, excess ROS.

Cohort test: Kalghatgi 2013

Mouse blood oxidative stress markers and tissue damage after quinolone class exposure are reported in the abstract, but ciprofloxacin was not confirmed to be in the cohort (full text unopened); CLASS EXTRAPOLATION, yellow cap [34].

Counter-evidence held on record

Counter-evidence and confounding Supraphysiologic concentrations, no in vivo ciprofloxacin marker study retrieved, and mixed direction across cell types. Framing caution A mechanistic signal only. No antioxidant supplement is recommended; NAC and MitoQ results are cell or mouse findings, not treatment advice.

Copper and Iron Balance

Copper and iron are assessed separately. Nothing here is counted twice.

Iron: oral iron lowers ciprofloxacin absorption (nutrient-to-drug timing interaction, not an iron depletion)

Yellow — Low

See study details

Oral iron products cut ciprofloxacin exposure by 46% to 63% in three independent crossover trials in healthy volunteers; the iron affects the antibiotic, so this is filed as a yellow timing interaction (Hard Rule 4) and implies no iron deficiency.

Full detail and limits

What the grade means here: Mechanistic plausibility only (Tier B), or class extrapolation (Tier C) with no drug-specific human status data; also used for context flags and interactions running the other direction. Yellow

Limits on what this shows

  • Null findings: None found for oral iron with oral ciprofloxacin. Related animal study: Wong 2000 [10] gave rats intravenous ciprofloxacin 5 mg/kg with oral ferrous sulfate 100 mg/kg (no gut contact): AUC was higher with iron (1.89 versus 1.00 mg.h/L), distribution volume about 2-fold and half-life about 4-fold higher, yet the microbiological-to-HPLC ratio fell (0.7 versus 1.1), which the authors read as reduced antimicrobial activity. Different route and species, so not counted toward the grade; it shows the interaction is not purely a gut-absorption effect in that model.
  • At-risk subgroups: People taking iron tablets, mineral-containing multivitamins or iron-fortified products near ciprofloxacin doses; infections with organisms of moderate susceptibility, where a lower peak matters more (Polk) [7].

Direction

Nutrient-to-drug TIMING INTERACTION, filed yellow under Hard Rule 4 (the nutrient affects the drug, so it is a timing interaction with a separation interval, not a depletion). Nutrient-to-drug: Iron salts chelate ciprofloxacin in the gut and lower its absorption. Ciprofloxacin is not shown here to lower iron status (Hard Rules 2 and 4); the drug-to-mineral question is carried in the ungraded entry on systemic mineral status and in the Overlap map.

Regulatory status

Label section 2.4 names "other products containing calcium, iron or zinc"; the section 7 table row "Antacids, Sucralfate, Multivitamins and Other Products Containing Multivalent Cations" says these "decrease ciprofloxacin absorption, resulting in lower serum and urine levels" and that ciprofloxacin should be taken "at least two hours before or six hours after" such products [1][2]. Drugs.com patient text lists iron supplements with the same 2 hour and 6 hour interval [21]. The NIH iron fact sheet does not mention quinolones [20].

Population evidence

Polk 1989 [7]: 12 healthy men, four-way crossover, ciprofloxacin 500 mg after an overnight fast. AUC alone 14.5 +/- 2.3 ug.h/mL (repeat control 15.7 +/- 2.8); with ferrous sulfate 325 mg three times a day for 7 days, dose taken with the last iron dose, 5.4 +/- 1.7 ug.h/mL (63% lower, calculated from the printed means); with a multivitamin with zinc 11.3 +/- 2.4. The authors state that peak concentrations with iron were below the MIC for 90% of strains of many normally susceptible organisms. Abstract read through an OpenAlex reconstruction and a PubMed listing. Lehto 1994 [8]: three two-period crossover trials, 8 healthy volunteers each; ciprofloxacin 500 mg with ferrous sulphate containing 100 mg elemental iron: AUC reduced 57% (P < 0.001), peak concentration reduced 54% (P < 0.01). The same paper gives norfloxacin 73% and ofloxacin 25% for AUC. Abstract read via a PubMed listing summary (confidence intervals not printed in the abstract). Kara 1991 [9]: randomized crossover in 8 healthy subjects; ferrous sulphate 300 mg lowered ciprofloxacin Cmax from 3.0 to 2.0 mg/L (about 33% lower) and AUC from 12.3 to 6.7 mg/L.h (about 46% lower), both significant; ferrous gluconate 600 mg lowered Cmax by 1.3 mg/L and AUC by 4.1 mg/L.h, and a Centrum Forte tablet by 1.4 mg/L and 5.4 mg/L.h (baselines not printed in the abstract, so no percent). The authors propose a ferric iron-ciprofloxacin complex at a 3:1 ratio. Abstract read via a PubMed listing summary. Note: the assignment attributed iron to Frost 1992 and antacids to Kara 1991; the retrieved records show the reverse (Frost 1992 is aluminum and calcium antacids, Kara 1991 is iron).

Independence

Three different research groups (Polk, Lehto, Kara), designs (7 day iron loading versus single doses), populations and years. Both measured the drug level directly, so the "nutrient" measured is the antibiotic exposure, not iron status.

Mechanism

Named: chelation (complex formation) between the multivalent cation and the quinolone. In vitro, aluminum, calcium and iron ions each slowed ciprofloxacin release across a membrane [14].

What is not shown

Whether the label separation interval fully restores exposure was not retrieved for iron specifically; no iron-status (ferritin, hemoglobin) measurement in ciprofloxacin users was found.

Separation interval

Label: ciprofloxacin at least 2 hours before or 6 hours after products containing calcium, iron or zinc, multivitamins and antacids [1]. This is the action the entry supports; it is not a nutrient recommendation.

Counter-evidence held on record

Counter-evidence and confounding Studies used healthy volunteers, fasting dosing and single doses of ciprofloxacin; real-world meals reduce but are not shown here to remove the effect. The clinical consequence (treatment failure) is an inference from reduced exposure, not a measured outcome in these trials. Framing caution This is a timing rule for the antibiotic, not an iron-deficiency finding. Do not stop or start iron because of it, and take no action beyond following the label spacing from the prescriber or pharmacist. No iron dose is recommended here.

Copper: ciprofloxacin forms copper complexes in vitro; no human or animal copper status measurement

Yellow — Low

See study details

Ciprofloxacin binds Cu(II) to form crystallographically and biologically characterized complexes, but every source found is a chemistry or formulation study and none measured copper status in a person; the only animal element panel found (zebrafish, whole-body copper in a figure not seen) reported no ciprofloxacin-alone effect on measured elements [57].

Full detail, limits and 1 references

What the grade means here: Mechanistic plausibility only (Tier B), or class extrapolation (Tier C) with no drug-specific human status data; also used for context flags and interactions running the other direction. Yellow

Limits on what this shows

  • Null findings: None needed; no measurement exists to be null.

Direction

Drug-to-copper chelation (chemistry only). Not a copper deficiency or excess finding. Kept separate from the Iron entry (Hard Rule 7).

Regulatory status

The label text read lists calcium, iron and zinc, magnesium and aluminum as cations; copper is not named [1].

Population evidence

None. No human copper, ceruloplasmin or urinary copper measurement in ciprofloxacin users was retrieved.

Chemistry and formulation evidence (Tier B)

Cu(II)-ciprofloxacin complexes characterized by X-ray crystallography (Drevensek 2003, PMID 12944650; Yang 2012, PMID 22412472), mixed-valence complexes with about the same gyrase activity as free drug (Drevensek 2005, PMID 15621275), and copper-complex inhaled formulations tested against Pseudomonas aeruginosa in rats (Tewes 2020, PMID 32442738; 2023, PMID 36970713) [48]. Abstract-level listing summaries only; the studies concern the drug acting with copper as a pharmaceutical complex, not body copper.

Mechanism

Named: metal-ion coordination by the quinolone keto-carboxylate group. No copper-handling mechanism in the body was shown.

Counter-evidence held on record

Counter-evidence and confounding The complexes were made for antibacterial formulation research; they say nothing about copper status in treated patients. Framing caution No copper supplement or restriction is implied. This is a chemistry note.

Systemic iron, zinc, calcium and magnesium status lowered by ciprofloxacin (drug-to-mineral direction)

Not graded — disclosed evidence gap

See study details

No human, animal or in vitro source was found showing that ciprofloxacin lowers body iron, zinc, calcium or magnesium status or raises their excretion, and no circulating claim of that direction was found; the documented direction is the minerals lowering ciprofloxacin absorption (graded above).

Full detail, limits and 1 references

What the grade means here: Nothing has been measured here, so this finding cannot be graded. That does not establish either safety or harm, and it is not the same as a White result. Ungraded

Limits on what this shows

  • Why no grade: Dual condition met: no Tier B or C source found for a systemic mineral status effect, and no circulating claim of that direction found. Not a finding of safety. Re-check with PubMed restored for single-mineral listings (for example "ciprofloxacin serum iron", "ciprofloxacin urinary calcium", "ciprofloxacin ferritin"), each run as its own simple query because a combined Boolean query returned nothing.

What was searched

Label text read: cations listed only as agents that lower ciprofloxacin absorption [1]. StatPearls: no mineral loss statement [3]. Consumer pages (Drugs.com, GoodRx) and Wikipedia fluoroquinolone toxicity: mineral claims run nutrient-to-drug only [21][22][52]. PubMed listings: "ciprofloxacin copper complex" (chemistry, copper entry above); an attempted listing "ciprofloxacin copper zinc iron serum levels chelation" returned unrelated records because the "patients" term dominated; a cleaner re-run ("ciprofloxacin copper zinc chelation status") was rate limited (429) and not read. The animal magnesium-deficiency literature (Magnesium and tendon entry) concerns local cartilage and tendon magnesium, and the ofloxacin rat study found unchanged total tissue magnesium [46].

Repair search (2026-10-08)

PubMed listing "ciprofloxacin hypomagnesemia" opened (5 records) [56]: two case reports in which low magnesium (with low phosphate and potassium in one) occurred in people given ciprofloxacin for diarrhea; the abstracts attribute the magnesium loss to chronic proton pump inhibitor use (PMID 36506733, confirmed on a second channel: OpenAlex abstract, magnesium normalized after the PPI was stopped) or give no cause (PMID 37791144, OpenAlex abstract: ciprofloxacin mentioned only as the initial treatment and not implicated), so ciprofloxacin was the intercurrent drug, not the proposed cause; two geriatric safety reviews (PMIDs 12641485, 20210367) list low magnesium as a reason for caution, not a measurement; and the Daya hypocalcemia torsade case (already cited) is a dialysis patient. A combined Boolean query for serum magnesium, zinc, iron and urinary zinc returned no matching records. The "ciprofloxacin zinc deficiency" PubMed listing opened (4 records, after two rate-limited attempts with other wording): a zinc review mentioning only that oral zinc lowers ciprofloxacin absorption, two bacterial in vitro papers, and one animal study. That animal study, Jijie 2023 [57] (zebrafish, ciprofloxacin alone 5 mg/L for 96 hours, n = 5 per group for element analysis, whole-body Ca, K, Mg, Na, Zn, Cu and Fe), is the only direct measurement of body minerals with ciprofloxacin found: the paper states no significant difference from control (Ca 4963.5 +/- 71.3 ug/g and Mg 355.8 +/- 12.7 ug/g in the ciprofloxacin group, values for K, Na, Zn, Cu and Fe are only in a figure not seen) and that ciprofloxacin alone had no effect on AChE, MDA, SOD or GPx. The mineral shifts in that paper (lower Ca, K, Mg, Na and higher Zn) occurred only with lead plus ciprofloxacin, so they are a lead effect. This is a Tier B animal null at a high exposure, not support for a deficiency; it reads OpenAlex abstract plus the MDPI article page via a summarizing tool. Iron and calcium listings ("ciprofloxacin serum iron", "ciprofloxacin urinary calcium") were not run, because the limited PubMed access allowed only one further query.

Channel outcomes

Mixed. The magnesium listing is a genuine null for a drug-to-magnesium effect (the only human records attribute the deficit to a PPI). Zinc now has a listing plus one animal null (zebrafish); iron and calcium were covered only by the earlier listings, the label, StatPearls, consumer pages and the ODS fact sheets, so the gap is better established for magnesium and zinc than for iron and calcium.

Gut Microbiome Risk

Each finding below is counted once, in this area only.

Gut microbiome risk: lower fecal diversity and loss of butyrate-producing taxa after 5 to 10 day courses, with recovery over 1 to 12 months and resistant-strain enrichment (two independent healthy-volunteer trials)

Red — Severe

See study details

In healthy adults, ciprofloxacin alone lowered fecal microbial diversity in two independent trials (3 volunteers; a 10-volunteer arm of a randomized placebo-controlled trial), with some taxa still unrecovered at 6 to 12 months; this is a community disturbance risk, not a nutrient deficiency.

Full detail, limits and 2 references

What the grade means here: Two or more independent Tier A sources, this drug in the cohort, the nutrient directly measured, consistent direction, clinically meaningful magnitude, a named mechanism, no substantial contradicting Tier A evidence. Red

Limits on what this shows

  • Null findings: Individual C in Dethlefsen showed no significant richness change; effects "varied among individuals" and between-person differences were the largest source of variability [23]. In the placebo-controlled trial, pyrosequencing showed clindamycin with a larger impact than ciprofloxacin [25], and the saliva shift was seen only at week 1 [24]. A 3-volunteer follow-up found no change in E. coli MIC or tolerance after 14 days (de Lastours 2022, PMID 35030401; listing line only) [28].
  • At-risk subgroups: Not defined by these cohorts (healthy adults only). Older adults and people with a prior disturbed gut or repeated courses were not studied in the sources read.

Direction

Disturbance of the gut microbial community (a risk entry). It implies no supplement, probiotic or fiber recommendation.

Regulatory status

Label section 5: "Clostridium difficile-associated diarrhea has been reported with use of nearly all antibacterial agents, including ciprofloxacin" [1]. In the label clinical-trial data nausea occurred in about 2.5% and diarrhea in about 1.6% of patients [1].

Population evidence

Dethlefsen 2008 [23]: 3 healthy adults, ciprofloxacin 500 mg twice a day for 5 days, five time points over 8 months. The effective number of species fell 82% (individual A), 63% (B) and 36% (C); taxonomic richness fell significantly in A and B (p < 10 to the minus 4 and p < 0.005) but not in C (p = 0.24 in the text, 0.129 in a figure legend); 30% of reference OTUs (442 of 1,450) responded; Faecalibacterium declined in all three; at 4 weeks community composition was within pretreatment variability, and several taxa had not recovered at 6 months. Read through a summarizing fetch of the PLOS article page (first 100,000 of 100,723 characters). Zaura 2015 / Rashid 2015 [24][25]: randomized, placebo-controlled trial in healthy adults; the ciprofloxacin arm that completed had 10 volunteers (Karolinska site); ciprofloxacin 500 mg twice daily for 10 days (dose from the Rashid abstract). Fecal Bray-Curtis dissimilarity from placebo was significant up to 1 month; Shannon diversity was significantly lower than baseline for up to 12 months, the longest of any antibiotic group; predicted metagenome at month 1: 612 of 4,606 functions significant (110 higher, 502 lower); butyrate-producer decline was attributed to ciprofloxacin and clindamycin together, not ciprofloxacin alone; normalization took about 1 to 12 months depending on species. No single OTU survived false-discovery correction. Zaura read through a summarizing fetch of the journal page (dose in a supplement not seen); Rashid abstract via OpenAlex only, with no sample size or index values. de Lastours 2017 [27]: 48 volunteers, ciprofloxacin days 0 to 14; enterococcal counts fell from about 5.9 to about 4.0 log cfu/g at day 7 and 3.9 at day 14; the fluoroquinolone-resistant fraction rose from 44% to 73% to 75%; at day 42, 10 of 48 (21%) still carried resistant strains. Culture-based, one genus, PubMed listing summary only. A French cohort, independent of the two above. Stewardson 2015 [53]: outpatients with urinary tract infection treated with ciprofloxacin or nitrofurantoin, compared with untreated patients and household contacts of ciprofloxacin-treated patients; V3-V4 16S pyrosequencing at three time points; groups similar at baseline. Ciprofloxacin had a significant global effect on the microbiota and nitrofurantoin did not; at the end of treatment Bifidobacterium, Alistipes, Faecalibacterium, Oscillospira, Ruminococcus and Dialister fell while Bacteroides, Blautia, Eubacterium and Roseburia rose, with substantial recovery by 4 weeks. Abstract read through a PubMed single-record listing; the OpenAlex record carries no abstract and the full text could not be opened (publisher redirect returned an empty page, ScienceDirect disallowed access), so group sizes, diversity indices and p values were NOT retrieved. A third independent human cohort (patients, with a nitrofurantoin comparator and a no-antibiotic control) in the same direction; it is supporting evidence and the red grade does not depend on it. Second-channel checks this repair : the Zaura mBio page [24] states that 10 volunteers completed each of the placebo and ciprofloxacin groups, that fecal diversity was "significantly reduced" in the ciprofloxacin group "even up to 12 months", and that the ciprofloxacin group differed from placebo (Bray-Curtis) up to 1 month; it prints no numeric Shannon values in the text (figure and supplementary text not seen) and gives no ciprofloxacin p value beyond the P < 0.05 threshold. The Rashid abstract on the OUP page [25] gives ciprofloxacin 500 mg twice daily for 10 days, "a strong effect on the diversity of the microbiome" and 1 to 12 months to normalize (a range for both antibiotics); the full text is paywalled, so no n or index values were retrievable.

Mechanism

Named: antibacterial activity against susceptible commensal bacteria, with selection of resistant strains, as interpreted by the cohort authors; the label itself states only the C. difficile warning [1].

Cohort test

Not independent: Zaura 2015 and Rashid 2015 (same antibiotics and doses, placebo comparator and one-year sampling; Zaura is a coauthor of Rashid; treated as the same trial) and Card 2015 (PMID 25987611, E. coli decreased and returned in 1 to 4 months; ciprofloxacin-resistant Veillonella persisted 12 months in saliva; listing line only) appear to report the same ciprofloxacin and clindamycin placebo-controlled volunteer trial (same antibiotics, placebo comparator, one-year sampling; not confirmed from full text), so they are treated as one trial [26]. Combination exposures, not counted: Lankelma 2017 (16 men, 7 days of ciprofloxacin plus vancomycin plus metronidazole; diversity lower in all treated) and Haak 2019 (13 men, same three drugs; diversity dropped, butyrate producers reduced, composition often still altered at 8 to 31 months) [29][30]. These are Tier C for ciprofloxacin alone. Raymond 2016, named in the assignment, was checked on two channels (PubMed listing and an OpenAlex single-record abstract): it studied the second-generation cephalosporin cefprozil (18 exposed participants, shotgun metagenomics; ciprofloxacin not mentioned), so it fails the cohort test and is not used [31]. A 2011 follow-up from the Dethlefsen group is likely to reuse the same three volunteers; it was not opened and is not counted. A repair-pass PubMed listing ("ciprofloxacin microbiome diversity volunteers", 5 records) returned no further ciprofloxacin-alone cohort beyond those above: de Lastours 2012 (PMID 22930806) is the same ciprofloxacin 14-day, 48-volunteer design as the 2017 report, tracks resistant E. coli by culture (no diversity measure) and is not counted separately; Card 2015, Rashid 2015, Haak 2019 and Lankelma 2017 are as described.

Why red and its edge

Two independent Tier A human cohorts with ciprofloxacin alone and the microbiome directly measured by 16S sequencing: Dethlefsen 2008 (n = 3, effective species down 36% to 82%) and the Zaura 2015 randomized placebo-controlled trial (n = 10 ciprofloxacin versus 10 placebo, diversity lower for up to 12 months). The direction is the same in both, a mechanism is named, and no Tier A source contradicts it; Stewardson 2015 (patients, with controls) points the same way. Rashid 2015 and Card 2015 are the Zaura trial and are not counted again; Raymond 2016 (cefprozil) is excluded. The red grade sits at the lower edge: the two cohorts are small (n = 3 and n = 10), the surrogate is community diversity rather than a clinical outcome, and one Dethlefsen volunteer showed no significant richness change. It is kept red, not demoted to orange, because both cohorts meet the red test as written (independent, drug present, measured directly, consistent, named mechanism) and the Zaura numbers rest on a placebo comparator.

Counter-evidence held on record

Counter-evidence and confounding Infection itself, diet, and co-medication confound patient studies, but these were healthy volunteers. Effects were smaller than clindamycin in one pyrosequencing comparison. Sample sizes are small and one cohort used culture of a single genus. Framing caution This is a disturbance risk, not a deficiency. No probiotic, fiber or vitamin supplement is recommended by this entry. New severe or persistent diarrhea during or after a course needs clinical assessment (the label carries a C. difficile warning).

Oxygen and ATP Output

Oxygen delivery and ATP production are assessed separately. Nothing here is counted twice.

ATP production: transient ATP decrease in one human T-cell line (16% at day 4, 35% at day 7, recovered by day 11) and null ATP/ADP in mouse islets; no human measurement

Yellow — Low

See study details

ATP was measured directly in two cell systems with different results, so the evidence is mechanistic and mixed; no in vivo or human ATP measurement was retrieved.

Full detail and limits

What the grade means here: Mechanistic plausibility only (Tier B), or class extrapolation (Tier C) with no drug-specific human status data; also used for context flags and interactions running the other direction. Yellow

Limits on what this shows

  • Null findings: Ghaly 2014 [38]: no significant change in ATP/ADP ratio in mouse islets. Salimiaghdam 2022 [37]: ATP not reported for ciprofloxacin; basal oxygen consumption rose. Hangas 2018 [35]: ATP not measured. Sailer 2025 [54]: ATP not measured; the respiration decreases (OXPHOS capacity down 16% to 39%) were at concentrations far above therapeutic peaks.

Direction

Drug-to-cell energy effect (mechanistic). Not a nutrient deficiency.

Regulatory status

No ATP statement in the label text read [1].

Population evidence

None in humans.

Cell evidence (Tier B)

Kozieł 2006 [36]: human Jurkat cells, 25 ug/mL: cellular ATP fell 16% on day 4 and 35% on day 7, then recovered by day 11, after a 60% fall in mtDNA content and respiratory chain inhibition (listing summary only). Liu 2026 [41]: in the abstract aspirin "restored ATP and ROS levels" in primary neurons after ciprofloxacin exposure, which implies lower ATP; no ciprofloxacin-alone figure in the abstract.

Counter-evidence held on record

Counter-evidence and confounding Different cells, concentrations and time courses; the one quantified decrease recovered while exposure continued. Framing caution A cell-level mechanistic note, not evidence that ciprofloxacin lowers energy in people. No energy or mitochondrial supplement is recommended.

Oxygen delivery/utilization: label-listed hemolytic and aplastic anemia; G6PD cohort found no major hemolysis signal with ciprofloxacin (adverse outcome, not a nutrient deficiency)

Yellow — Low

See study details

The label lists anemia, including hemolytic and aplastic, as a postmarketing reaction; a large G6PD-deficiency database study included ciprofloxacin among drugs prescribed without major hemolysis, and no hemoglobin cohort exists for ciprofloxacin.

Full detail and limits

What the grade means here: Mechanistic plausibility only (Tier B), or class extrapolation (Tier C) with no drug-specific human status data; also used for context flags and interactions running the other direction. Yellow

Limits on what this shows

  • Null findings: The G6PD cohort above is a null for major hemolysis [47]. The StatPearls chapter did not mention G6PD [3].

Direction

Adverse-outcome entry (hematologic reaction). Anemia is not iron deficiency and this is not an oxygen-delivery nutrient finding (Hard Rule 2). Distinct from the Iron entry, which concerns absorption of the antibiotic.

Regulatory status

Label section 5.6: "Anemia, including hemolytic and aplastic" is listed among hematologic reactions; no G6PD deficiency text was in the label text read [1].

Population evidence

Gronich 2024 [47]: Clalit Health Services database, 31,962 G6PD-deficient patients (G6PD below 6 U/g Hb), 71 hospitalized major hemolysis cases (0.2%), 51 linked to fava beans, 6 to infection, 3 suggested medication-related (nitrofurantoin, phenazopyridine, a pain killer). The abstract (via a PubMed listing summary) names ciprofloxacin only as a drug prescribed to many G6PD-deficient patients without major hemolysis; ciprofloxacin-specific counts were not retrieved.

Mechanism

Not retrieved for ciprofloxacin. No immune hemolysis case report for ciprofloxacin was retrieved in the listing opened.

Counter-evidence held on record

Counter-evidence and confounding A database study of hospitalized major hemolysis cannot exclude mild or subclinical hemolysis; infection in the indication is a competing explanation for anemia. Framing caution A label-listed adverse reaction. Unexplained pallor, dark urine, jaundice or marked fatigue during a course needs clinical assessment; iron supplements are not the remedy and also lower ciprofloxacin absorption.

Claims checked and not supported

These circulate online for this medication. They are listed here only so they can be answered, never as findings, and they are not graded.

A claim with no supporting evidence is not necessarily disproven. Where evidence actually argues against a claim, that is stated below.

  • B vitamins and "good bacteria" lost to ciprofloxacin, needing replacement (provisional, tooling-limited)

    Where it comes from: General consumer and supplement-retail framing that antibiotics deplete B vitamins and gut flora. No page asserting this for ciprofloxacin was found: the Drugs.com and GoodRx pages name no vitamin depletion and recommend no probiotic or supplement [21][22]. The claim was not traced to a specific origin because the web-search budget was exhausted; the NIH fact sheets for B6, B12 and thiamin were added in the repair and also name no ciprofloxacin interaction [55].

    Why it fails: No ciprofloxacin study measured thiamine, B6 or B12; the one vitamin-deficiency listing and three vitamin-specific listings run in the repair found no such record, and the NIH fact sheets for B6, B12 and thiamin name no quinolone [55][56]. The gut microbiome disturbance is real (graded red) but no source links it to a vitamin shortfall in ciprofloxacin users; the only folate datum (rat) runs in the protective direction. Held out of publication as a deficiency claim pending a re-check.

  • "Floxing": ciprofloxacin damages mitochondria and causes a lasting syndrome through magnesium chelation, at ordinary doses

    Where it comes from: Wikipedia "Fluoroquinolone toxicity" (Tier D) uses the term "floxing", states that some class members inhibit mitochondrial DNA synthesis and links toxicity to oxidative stress; the term is sourced there to an unattributed 2023 North Carolina Medical Society article that was not opened [52].

    Why it fails: The stronger clinical claim fails: no human measurement of mitochondrial function, oxidative markers or magnesium in ciprofloxacin users was found. The mechanistic parts are carried as yellow entries (in vitro mtDNA loss at 25 to 120 ug/mL, ROS in cultured cells, animal tendon and magnesium data) and are not clinical evidence. The label lists tendon, nerve and other serious reactions as outcomes, not mitochondrial or magnesium findings [1].

  • "Avoid all dairy, calcium and mineral products while taking ciprofloxacin" (overstated)

    Where it comes from: Consumer pharmacist tip: "avoid dairy products (e.g., milk, yogurt) and calcium-containing juices" [22].

    Why it fails: The label and Drugs.com restrict the rule to dairy or calcium-fortified juice taken alone; a meal containing them is acceptable, and mineral supplements and antacids are handled by timing (2 hours before or 6 hours after), not prohibition [1][21]. The interaction is real (see Iron, Calcium and dairy) but the absolute form of the advice is not what the label says.

How the body handles this medication

Metabolism and enzymes
Ciprofloxacin is an inhibitor of CYP1A2; coadministered theophylline, caffeine and tizanidine can reach higher concentrations, and tizanidine is contraindicated. The label states the drug is "also metabolized and partially cleared" besides renal excretion; metabolites and enzymes other than CYP1A2 were not named in the text read. No enzyme induction was found.[1]; [3]
Elimination
Eliminated primarily by renal excretion: 40% to 50% excreted unchanged in urine and about 20% to 35% in feces after an oral dose; half-life about 4 hours (3.3 to 6.8 hours in the elderly). Probenecid interferes with renal tubular secretion and raises ciprofloxacin serum levels.[3]; [1]
Absorption
Oral bioavailability 70% to 80%. Dairy products or calcium-fortified juice taken alone lower absorption; a meal containing them is acceptable. No named absorption transporter was found in the text read.[3]; [1]
Renal and hepatic handling
Renal excretion is the main route, so exposure is higher in renal impairment (the specific dose adjustment text was not retrieved). The label lists crystalluria, hepatotoxicity and, among serious reactions, pediatric musculoskeletal effects.[1]
Interactions of nutritional interest
Multivalent cations (magnesium/aluminum antacids, calcium, iron, zinc, sucralfate, multivitamins): "decrease ciprofloxacin absorption, resulting in lower serum and urine levels"; take ciprofloxacin at least 2 hours before or 6 hours after. Human studies: iron AUC -46% to -63%, calcium carbonate about -40%, antacid about -85% within minutes.[1]; [9]; [8]; [7]; [11]; [12]
Electrolyte and other content
The label lists hypokalemia and hypomagnesemia as QT risk factors. Warfarin: monitor prothrombin time and INR frequently. Sulfonylureas: blood glucose disturbances. Clinical pharmacology (label section 12) text was not available in the fetched label pages, so no peak concentration is quoted.[1]

What the research says is worth watching

General information from the medication label and the studies above. It is not personal medical advice, and any change belongs with your prescriber.

  • Timing / supplements, antacids, dairy

    Separate from multivalent cations

    The label directs ciprofloxacin at least 2 hours before or 6 hours after magnesium or aluminum antacids, sucralfate, multivitamins and products containing calcium, iron or zinc [1]. Dairy or calcium-fortified juice taken alone lowers absorption; a meal containing them is acceptable [1]. The NIH fact sheets use somewhat different intervals for magnesium, zinc and calcium [17][18][19]; the label governs. This is a spacing instruction, not a reason to change nutrient intake.

  • Lab / people with diabetes

    Blood glucose

    People with diabetes, especially on insulin or sulfonylureas, need close glucose monitoring; stop and seek care for a hypoglycemic reaction per the label [1]. This is a safety outcome, not a nutrient finding.

  • Lab / anticoagulated patients

    INR check

    Frequent prothrombin time and INR monitoring during and shortly after coadministration with warfarin [1]. Vitamin K supplements are not the remedy.

  • Lab or ECG / QT risk

    Potassium and magnesium

    Uncorrected low potassium or magnesium, known QT prolongation or other QT-prolonging drugs are reasons to avoid ciprofloxacin per the label [1]. Electrolyte correction belongs to the prescriber; magnesium products also need spacing from the dose.

  • Symptoms / during and after a course

    Tendon, nerve and bowel symptoms

    Tendon pain or swelling, new numbness or tingling, and severe or persistent diarrhea warrant prompt clinical assessment (tendinitis and rupture, peripheral neuropathy and C. difficile warnings) [1]. These are clinical outcomes, not nutrient findings.

  • Lab / unusual symptoms

    Complete blood count

    Jaundice, dark urine, new pallor or unexplained fatigue justify a blood count and review for hemolysis (label-listed anemia including hemolytic and aplastic) [1]. Iron indices are not the first test, and iron tablets lower ciprofloxacin absorption.

  • Special populations

    Pregnancy, renal impairment, children

    Renal impairment raises exposure because excretion is mainly renal [3]. The label lists pediatric musculoskeletal effects among its warnings [1]; the juvenile animal data in the Magnesium and tendon entry are not guidance. No pregnancy-specific nutrient finding was graded in this review.

Overlap map, to prevent double counting

  • Iron; Calcium and dairy; Magnesium and aluminum antacids; Zinc (all four yellow timing interactions)

    Shares evidence with: Each other; Potassium and magnesium; Magnesium and tendon

    Note: All four rest on the same mechanism (chelation by multivalent cations) and the same label sentence (section 2.4 and the section 7 cation row). Polk 1989 supplies both the iron and the zinc numbers; Frost 1992 supplies both the calcium carbonate and aluminum hydroxide numbers and shares an author with Nix 1989. Treat as one mechanism with several cations, not independent confirmations of each other.

  • Mitochondrial burden

    Shares evidence with: Oxidative stress; ATP production; Magnesium and tendon; Copper

    Note: Same cell studies: Lowes 2009 (human tendon cells, membrane potential and ROS), Kozieł 2006 (mtDNA, ATP), Liu 2026 and Zeng 2024 (ROS, membrane potential), Ghaly 2014, Salimiaghdam 2022 and Sailer 2025 (null/mixed or supratherapeutic respirometry). Kalghatgi 2013 is class extrapolation for both mitochondrial and oxidative entries. Oxidative stress and ATP add no source beyond these; the three entries are one body of in vitro evidence.

  • Gut microbiome risk

    Shares evidence with: Vitamin K and INR; Folate; Fails verification: B vitamins

    Note: The vitamin K and folate entries rest on the same unmeasured idea that fewer gut bacteria change vitamin status; neither is confirmation of the microbiome finding. Zaura 2015, Rashid 2015 and Card 2015 are one trial counted once. Dethlefsen 2008 and Zaura 2015 are the two independent cohorts behind the red grade; Stewardson 2015 and de Lastours 2017 are supporting and not counted toward it.

  • Magnesium and aluminum antacids

    Shares evidence with: Magnesium and tendon; Potassium and magnesium

    Note: The in vitro ciprofloxacin-magnesium complex study supports both the antacid and the tendon hypothesis; the QT entry concerns magnesium status as a risk modifier and shares only the nutrient name. The magnesium-and-tendon animal studies are not evidence for the absorption interaction.

  • Oxygen delivery/utilization

    Shares evidence with: Iron

    Note: No shared source. Hemolytic anemia is a drug-toxicity outcome and is not an iron finding; the Iron entry concerns absorption of the antibiotic.

  • Copper

    Shares evidence with: Iron

    Note: No shared source; the copper evidence is chemistry only. The pair is graded separately per Hard Rule 7.

  • Blood glucose

    Shares evidence with: (none)

    Note: Chou 2013 and Aspinall 2009 are used only here. The glucose entry is an outcome, not a nutrient, and is independent of every other entry.

  • Vitamin K and INR; Folate

    Shares evidence with: Fails verification: B vitamins

    Note: All three rest on the same unproven chain from gut bacteria to vitamins; neither has a measurement in ciprofloxacin users.

All references used above
  1. Ciprofloxacin tablets, coated, prescribing information (Yiling Pharmaceutical, DailyMed set id 6fd3da0b-7428-ac8f-e053-2a91aa0aed9f). — Regulatory label (Tier A). Read through a summarizing fetch tool in several passes (page 106,755 characters; the summarizer supplied sections 2.3, 2.4, 5.1 to 5.19, 6 and the section 7 interaction table). Section 12 (clinical pharmacology: absorption, bioavailability, half-life, metabolites) was not in the text returned, so the label supplies no pharmacokinetic numbers here. Source of: multivalent cation and dairy statements and the 2 hours before or 6 hours after interval; CYP1A2 inhibition; tizanidine contraindication; theophylline, warfarin (INR) and glyburide-class statements; probenecid; blood glucose, QT, tendon, neuropathy, hemolytic and aplastic anemia and C. difficile warnings; nausea about 2.5% and diarrhea about 1.6%.Summarizer output, not raw text; section 12.3 and any G6PD text were not seen.
  2. Ciprofloxacin tablets, coated, prescribing information (Bryant Ranch Prepack repackager of the Yiling product, DailyMed set id 7030109d-5ce0-43f1-a5ed-16a3562acd40). — Regulatory label (Tier A), second copy of the same generic text. Read through a summarizing fetch tool (characters 40,000 onward). Used to confirm the dairy, hypoglycemia and QT wording. Not an independent label.Same text as the first label; section 12.3 not in the returned text.
  3. Thai T, Salisbury BH, Zito PM. Ciprofloxacin. StatPearls, NCBI Bookshelf NBK535454 (updated 2023-08-28). — Established pharmacology reference (Tier B). Read through a summarizing fetch tool. Source of oral bioavailability 70 to 80%, half-life 4 hours, 40 to 50% excreted unchanged in urine and 20% to 35% in feces, CYP1A2 inhibition, dairy and antacid statements; iron, zinc and G6PD not mentioned.
  4. WHO Collaborating Centre, ATC/DDD Index: J01MA02 ciprofloxacin. — Reference index. Confirms J01MA02, fluoroquinolones; DDD 1 g oral, 0.8 g parenteral.
  5. ClinCalc DrugStats: Ciprofloxacin. — Prescription statistics page. Rank 159 in 2024 with an estimated 3,547,442 prescriptions. Read through a summarizing fetch tool.Tier D statistics page; no evidence claim rests on it.
  6. Wikipedia: Ciprofloxacin. — General reference, Tier D. Used only for the brand name (Cipro, "others") and a cross-check of bioavailability (70%). Read through a summarizing fetch tool.Tier D; no evidence claim rests on it.
  7. Polk RE, Healy DP, Sahai J, Drwal L, Racht E. Effect of ferrous sulfate and multivitamins with zinc on absorption of ciprofloxacin in normal volunteers. Antimicrob Agents Chemother 1989;33(11):1841-1844. — Tier A (12 healthy men, four-way crossover, ciprofloxacin 500 mg). PMID 2610494. Abstract read as a reconstructed OpenAlex abstract and a PubMed listing. Full text not opened.Abstract only.
  8. Lehto P, Kivisto KT, Neuvonen PJ. The effect of ferrous sulphate on the absorption of norfloxacin, ciprofloxacin and ofloxacin. Br J Clin Pharmacol 1994;37(1):82-85. — Tier A (three two-period crossover trials, 8 volunteers each). PMID 8148225. Abstract read via a PubMed single-record listing summary; the OpenAlex lookup was rate limited. Full text not opened.Abstract only, via summarizer.
  9. Kara M, Hasinoff BB, McKay DW, Campbell NR. Clinical and chemical interactions between iron preparations and ciprofloxacin. Br J Clin Pharmacol 1991;31(3):257-261. — Tier A (randomized crossover, 8 healthy subjects). PMID 2054264. Abstract read via a PubMed listing summary. Full text not opened.Abstract only, via summarizer. Listing line only for the companion review (Campbell and Hasinoff, PMID 2054263), not used.
  10. Wong PY, Zhu M, Li RC. Pharmacokinetic and pharmacodynamic interactions between intravenous ciprofloxacin and oral ferrous sulfate. J Chemother 2000;12(4). PMID 10949977. — Tier B (rats; intravenous ciprofloxacin 5 mg/kg with oral ferrous sulfate 100 mg/kg). OpenAlex reconstructed abstract read: AUC higher with iron (1.89 versus 1.00 mg.h/L), distribution volume about 2-fold and half-life about 4-fold higher; microbiological to HPLC ratio 0.7 versus 1.1.Animal study; not an oral human interaction.
  11. Frost RW, Lasseter KC, Noe AJ, Shamblen EC, Lettieri JT. Effects of aluminum hydroxide and calcium carbonate antacids on the bioavailability of ciprofloxacin. Antimicrob Agents Chemother 1992;36(4):830-832. — Tier A (12 healthy volunteers, 750 mg, three-way randomized crossover). PMID 1503446. Abstract read twice (PubMed listing and OpenAlex reconstruction; the two agree). Full text not opened.Abstract only.
  12. Nix DE, Watson WA, Lener ME, Frost RW, Krol G, Goldstein H, Lettieri J, Schentag JJ. Effects of aluminum and magnesium antacids and ranitidine on the absorption of ciprofloxacin. Clin Pharmacol Ther 1989. PMID 2598571. — Tier A (crossover studies in healthy male volunteers; n not stated in the abstract). Abstract read via a PubMed listing summary only; AUC and Cmax not reported there.Abstract only, via summarizer; shares author Frost RW with source [frost].
  13. Neuvonen PJ, Kivisto KT, Lehto P. Interference of dairy products with the absorption of ciprofloxacin. Clin Pharmacol Ther 1991;50(5 Pt 1):498-502. — Tier A (7 healthy volunteers, 500 mg with water, milk or yogurt, randomized crossover). PMID 1934862. Abstract read via a PubMed listing summary. Full text not opened.Abstract only, via summarizer.
  14. Kato R, Ueno K, Imano H, Kawai M, Kuwahara S, Tsuchishita Y, Yonezawa E, Tanaka K. Impairment of ciprofloxacin absorption by calcium polycarbophil. J Clin Pharmacol 2002;42(7):806-811. — Tier A for the volunteer crossover arm (400 mg with 1200 mg calcium polycarbophil; n not stated in the record), Tier B for the in vitro and rat arms. PMID 12092748. OpenAlex reconstructed abstract only.Abstract only; volunteer number and Cmax not in the record.
  15. Gugler R, Allgayer H. Effects of antacids on the clinical pharmacokinetics of drugs. An update. Clin Pharmacokinet 1990. PMID 1969784. — Review (Tier C). PubMed listing summary only: aluminum and magnesium hydroxide antacids reduce ciprofloxacin absorption by 50% to 90%.Listing line only; not used for grading.
  16. Adepoju-Bello AA, et al. The physicochemical and antibacterial properties of ciprofloxacin-Mg2+ complex. Niger Q J Hosp Med 2008. PMID 19062475. — Tier B in vitro (1:1 complex, stability constant 3.59 at 25 C; smaller inhibition zones). PubMed listing summary only.Listing line only.
  17. NIH Office of Dietary Supplements. Magnesium: Fact sheet for health professionals. — Reference fact sheet (Tier C for this drug). Names ciprofloxacin and levofloxacin as quinolones that form insoluble complexes with magnesium; antibiotic "at least 2 hours before or 4 to 6 hours after" the supplement. Read through a summarizing fetch tool.
  18. NIH Office of Dietary Supplements. Zinc: Fact sheet for health professionals. — Reference fact sheet (Tier C for this drug). Quinolones (such as Cipro) might interact with zinc in the gut; antibiotic at least 2 hours before or 4 to 6 hours after the supplement. Read through a summarizing fetch tool.
  19. NIH Office of Dietary Supplements. Calcium: Fact sheet for health professionals. — Reference fact sheet (Tier C for this drug). Names ciprofloxacin; "Taking the antibiotic 2 hours before or 2 hours after calcium supplements prevents this effect". Read through a summarizing fetch tool.Interval differs from the label; the label governs.
  20. NIH Office of Dietary Supplements. Iron: Fact sheet for health professionals. — Reference fact sheet. Interactions section lists levodopa, levothyroxine and proton pump inhibitors; quinolones and ciprofloxacin are not mentioned. Read through a summarizing fetch tool.Does not mention ciprofloxacin.
  21. Drugs.com: Ciprofloxacin patient information (Drugs.com Multum). — Tier D patient page, used only to cross-check wording: dairy and calcium-fortified juice not alone; calcium, iron, magnesium and zinc supplements and calcium, magnesium or aluminum antacids at 2 hours before or 6 hours after; tell the doctor about low potassium or magnesium; low blood sugar warning. Read through a summarizing fetch tool.Tier D; no claim rests on it.
  22. GoodRx: Ciprofloxacin (Cipro), what is it. — Tier D consumer page, used as a circulating-claim check. States no depletion of any vitamin or mineral and recommends no probiotic or supplement; dairy and calcium or iron supplements lower absorption (2 hours before or 6 hours after); low blood potassium or magnesium as a QT risk factor. Read through a summarizing fetch tool.Tier D; no claim rests on it.
  23. Dethlefsen L, Huse S, Sogin ML, Relman DA. The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing. PLoS Biol 2008;6(11):e280. — Tier A (3 healthy adults, ciprofloxacin 500 mg twice daily for 5 days, 8 months of sampling). DOI 10.1371/journal.pbio.0060280. Full text read through a summarizing fetch tool of the PLOS page (first 100,000 of 100,723 characters).Summarizer output; n = 3.
  24. Zaura E, Brandt BW, et al. Same exposure but two radically different responses to antibiotics: resilience of the salivary microbiome versus long-term microbial shifts in feces. mBio 2015;6(6):e01693-15. PMID 26556275. — Tier A (randomized placebo-controlled trial, 66 healthy adults across clindamycin, ciprofloxacin, amoxicillin and minocycline; ciprofloxacin arm 10 volunteers completing, Karolinska site). Journal page read through a summarizing fetch tool, twice (the second read in the repair confirmed n = 10 completers in each of the placebo and ciprofloxacin groups; dose, numeric Shannon values and several tables are in the figures and supplements, not seen).Summarizer output; supplements not opened.
  25. Rashid MU, Zaura E, et al. Determining the long-term effect of antibiotic administration on the human normal intestinal microbiota using culture and pyrosequencing methods. Clin Infect Dis 2015;60(Suppl 2):S77-S84. PMID 25922405. — Tier A (appears to be the same trial as [zaura]: same drugs, placebo comparator, one-year sampling, shared author; ciprofloxacin 500 mg twice daily or clindamycin 150 mg four times daily for 10 days versus placebo, six time points over 1 year). DOI 10.1093/cid/civ137. OpenAlex reconstructed abstract, plus the OUP abstract page (https://academic.oup.com/cid/article/60/suppl_2/S77/368701; full text paywalled): ciprofloxacin 500 mg twice daily for 10 days, "strong effect on the diversity", 1 to 12 months to normalize; no n and no index values.Treated as not independent of [zaura]; abstract only.
  26. Card RM, Mafura M, et al. Impact of ciprofloxacin and clindamycin administration on Gram-negative bacteria isolated from healthy volunteers and characterization of the resistance genes they harbor. Antimicrob Agents Chemother 2015. PMID 25987611. — Tier A-type listing only (PubMed listing summary): fecal E. coli decreased after ciprofloxacin and returned in 1 to 4 months; ciprofloxacin-resistant Veillonella increased in saliva for 12 months. n and dose not stated in the listing. Appears to concern the same volunteer trial as [zaura] and [rashid]; not confirmed from the full text.Listing line only; not counted as independent.
  27. de Lastours V, Maugy E, et al. Ecological impact of ciprofloxacin on commensal enterococci in healthy volunteers. J Antimicrob Chemother 2017. PMID 28333351. — Tier A-type (48 volunteers, ciprofloxacin day 0 to 14). PubMed listing summary only: enterococci 5.9 to about 4.0 log cfu/g at day 7 and 3.9 at day 14; fluoroquinolone-resistant fraction 44% to 73% to 75%; 10 of 48 resistant carriers at day 42. Dose not stated in the listing.Listing line only; culture-based, one genus.
  28. de Lastours V, El Meouche I, et al. Evolution of fluoroquinolone-resistant Escherichia coli in the gut after ciprofloxacin treatment. Int J Med Microbiol 2022. PMID 35030401. — PubMed listing summary only: three volunteers, ciprofloxacin 14 days, E. coli isolates day 0 and day 42 showed no MIC, growth, mutation frequency or tolerance change.Listing line only.
  29. Haak BW, Lankelma JM, et al. Long-term impact of oral vancomycin, ciprofloxacin and metronidazole on the gut microbiota in healthy humans. J Antimicrob Chemother 2019. PMID 30418539. — Combination exposure (Tier C for ciprofloxacin alone): 13 healthy men, 7 days of the three drugs; diversity dropped, butyrate producers reduced; largely back toward baseline by 8 to 31 months with composition often altered. Listing summary only.Combination arm; listing line only; not counted.
  30. Lankelma JM, Cranendonk DR, et al. Antibiotic-induced gut microbiota disruption during human endotoxemia: a randomised controlled study. Gut 2017. PMID 27307305. — Combination exposure (Tier C for ciprofloxacin alone): 16 healthy men, 7 days of ciprofloxacin plus vancomycin plus metronidazole; diversity lower in all treated; innate immune response unchanged. Listing summary only.Combination arm; listing line only; not counted.
  31. Raymond F, Ouameur AA, Deraspe M, et al. The initial state of the human gut microbiome determines its reshaping by antibiotics. ISME J 2016;10(3):707-720. PMID 26359913. — Opened as a PubMed listing summary and re-read on a second channel (OpenAlex works/pmid record): studied cefprozil (18 exposed participants, shotgun metagenomics); ciprofloxacin is not mentioned, so no result from it is used here.Ciprofloxacin NOT in the cohort; excluded.
  32. Aspinall SL, Good CB, Jiang R, McCarren M, Dong D, Cunningham FE. Severe dysglycemia with the fluoroquinolones: a class effect? Clin Infect Dis 2009;49(3):402-408. PMID 19545207. — Tier A (Veterans Affairs retrospective inception cohort, 2000 to 2005; ciprofloxacin reported separately versus azithromycin). PubMed listing summary only; n not in the abstract.Abstract only, via summarizer.
  33. Chou HW, Wang JL, Chang CH, Lee JJ, Shau WY, Lai MS. Risk of severe dysglycemia among diabetic patients receiving levofloxacin, ciprofloxacin, or moxifloxacin in Taiwan. Clin Infect Dis 2013;57(7):971-980. PMID 23948133. — Tier A (population-based inception cohort of diabetic patients, total 78,433 across groups, propensity-adjusted; ciprofloxacin reported separately versus macrolides). PubMed listing summary only; ciprofloxacin-specific n not in the abstract.Abstract only, via summarizer.
  34. Kalghatgi S, Spina CS, Costello JC, et al. Bactericidal antibiotics induce mitochondrial dysfunction and oxidative damage in mammalian cells. Sci Transl Med 2013;5(192):192ra85. PMID 23825301. — Abstract read (OpenAlex reconstruction, Crossref record, PubMed listing): names quinolones, aminoglycosides and beta-lactams as classes; does not name ciprofloxacin. The full text could not be opened (PMC bot-verification page; Science 403; Europe PMC blocked by robots rules), so whether ciprofloxacin was in the tested set is UNCONFIRMED. Used as class extrapolation only.Ciprofloxacin cohort membership not confirmed; full text not opened.
  35. Hangas A, et al. Ciprofloxacin impairs mitochondrial DNA replication initiation through inhibition of Topoisomerase 2. Nucleic Acids Res 2018;46(18):9625-9636. — Tier B in vitro (HeLa, HEK293, C2C12 myotubes; ciprofloxacin 80 ug/mL). Article page read through a summarizing fetch tool; no ATP, respiration or membrane potential measured; no comparison with clinical levels.Summarizer output.
  36. Koziel R, et al. Calcium signals are affected by ciprofloxacin as a consequence of reduction of mitochondrial DNA content in Jurkat cells. Antimicrob Agents Chemother 2006. PMID 16641433. — Tier B in vitro (human Jurkat cells, 25 ug/mL for several days): mtDNA content -60%, ATP -16% day 4 and -35% day 7, recovered by day 11; capacitative Ca2+ entry -33%, -50%, -50%. PubMed listing summary only.Listing summary only.
  37. Salimiaghdam N, et al. Effects of fluoroquinolones and tetracyclines on mitochondria of human retinal MIO-M1 cells. Exp Eye Res 2022. PMID 34856207. — Tier B in vitro (30, 60, 120 ug/mL): metabolism, membrane potential and mtDNA copy number lower at 120 ug/mL; ROS lower at 72 hours; basal oxygen consumption higher; ATP not reported for ciprofloxacin. PubMed listing summary only.Listing summary only.
  38. Ghaly H, et al. Effect of fluoroquinolones on mitochondrial function in pancreatic beta cells. Eur J Pharm Sci 2014. PMID 24284031. — Tier B (isolated mouse islets): no significant change in NAD(P)H or ATP/ADP; morphology and insulin granule number changed at 10 and 100 uM. PubMed listing summary only.Listing summary only.
  39. Lowes DA, Wallace C, Murphy MP, Webster NR, Galley HF. The mitochondria targeted antioxidant MitoQ protects against fluoroquinolone-induced oxidative stress and mitochondrial membrane damage in human Achilles tendon cells. Free Radic Res 2009;43(4):323-328. PMID 19235604. — Tier B in vitro (normal human Achilles tendon cells, ciprofloxacin 0 to 0.3 mM): DCF oxidation rate up to 3-fold, membrane potential loss, prevented by MitoQ. PubMed listing summary only.Listing summary only.
  40. Zeng W, Liang Y, et al. Ciprofloxacin accelerates angiotensin-II-induced vascular smooth muscle cells senescence through modulating AMPK/ROS pathway in aortic aneurysm and dissection. Cardiovasc Toxicol 2024;24(9):889-903. PMID 39138741. — Tier B in vitro (primary human aortic smooth muscle cells, 110 ug/mL for 72 hours, with angiotensin II): ROS up, membrane potential down, AMPK phosphorylation suppressed. PubMed listing summary only.Listing summary only.
  41. Liu H, et al. Ciprofloxacin exposure impairs neurogenesis and E/I balance in human cortical organoids. Neuropharmacology 2026. PMID 41895646. — Tier B (human cortical organoids, chronic low-dose two weeks; primary mouse neurons): excess ROS, lower membrane potential; aspirin restored ATP and ROS. PubMed listing summary only; concentration not in the abstract.Listing summary only.
  42. Fromenty B. Alteration of mitochondrial DNA homeostasis in drug-induced liver injury. Food Chem Toxicol 2020;135:110916. PMID 31669601. — Review (Tier C). PubMed listing summary only: ciprofloxacin listed among drugs that inhibit hepatic mtDNA replication; cited studies not opened.Listing line only.
  43. Shakibaei M, de Souza P, van Sickle D, Stahlmann R. Biochemical changes in Achilles tendon from juvenile dogs after treatment with ciprofloxacin or feeding a magnesium-deficient diet. Arch Toxicol 2001. PMID 11570695. — Tier B (juvenile dogs, n = 3 per group; ciprofloxacin 30 or 200 mg/kg for 5 days or a magnesium-deficient diet for 6 weeks). PubMed listing summary only.Listing summary only; n = 3.
  44. Pfister K, Mazur D, Vormann J, Stahlmann R. Diminished ciprofloxacin-induced chondrotoxicity by supplementation with magnesium and vitamin E in immature rats. Antimicrob Agents Chemother 2007. PMID 17210779. — Tier B (24-day-old Wistar rats, 12 per group; ciprofloxacin 600 mg/kg subcutaneously twice): lesions fell 41% with vitamin E, 65% with magnesium, 82% with both. PubMed listing summary only.Listing summary only; animal study, no human implication drawn.
  45. Stahlmann R, et al. Magnesium deficiency induces joint cartilage lesions in juvenile rats which are identical to quinolone-induced arthropathy. Antimicrob Agents Chemother 1995. PMID 8540708; and Shakibaei M, et al., Antimicrob Agents Chemother 2000, PMID 10639347. — Ofloxacin in juvenile rats (Tier C for ciprofloxacin, class extrapolation). PubMed listing summaries only.Ofloxacin, not ciprofloxacin; listing summary only.
  46. Lozo E, Riecke K, Schwabe R, Vormann J, Stahlmann R. Synergistic effect of ofloxacin and magnesium deficiency on joint cartilage in immature rats. Antimicrob Agents Chemother 2002. PMID 12019086. — Ofloxacin in juvenile rats (Tier C for ciprofloxacin, class extrapolation). PubMed listing summary only.Ofloxacin, not ciprofloxacin; listing summary only.
  47. Gronich N, Rosh B, Stein N, Saliba W. Medications and acute hemolysis in G6PD-deficient patients: a real-world study. Clin Pharmacol Ther 2024;116(6):1537-1543. PMID 38842030. — Tier A-type cohort (Clalit database, 31,962 G6PD-deficient patients, 71 major hemolysis cases). PubMed listing summary only; ciprofloxacin named only as a drug prescribed without major hemolysis; ciprofloxacin-specific counts not retrieved.Listing summary only.
  48. Copper-ciprofloxacin complex literature (PubMed listing "ciprofloxacin copper complex"): Drevensek 2003 (PMID 12944650); Yang 2012 (PMID 22412472); Drevensek 2005 (PMID 15621275); Tewes 2020 (PMID 32442738); Tewes 2023 (PMID 36970713); and others. — Tier B chemistry and formulation studies. PubMed listing summaries only; none measured body copper.Listing summaries only.
  49. Tasos E, Elliott E, Sharip MT, Massey D. Spontaneous haemopericardium due to vitamin K deficiency in an adult patient with cardiofaciocutaneous syndrome. BMJ Case Rep 2022. PMID 36581361. — Tier B case report: vitamin K deficiency "possibly exacerbated by subsequent ciprofloxacin use". PubMed listing summary only.Listing summary only; causality unproven.
  50. Homann N, Tillonen J, Salaspuro M. Microbially produced acetaldehyde from ethanol may increase the risk of colon cancer via folate deficiency. Int J Cancer 2000. PMID 10738242. — Tier B (Wistar rats, ethanol with or without ciprofloxacin). PubMed listing summary only: acetaldehyde 387 to 21 uM with ciprofloxacin; colonic mucosal folate -48% with alcohol, prevented by ciprofloxacin.Listing summary only.
  51. Daya SK, Gowda RM, Khan IA. Ciprofloxacin- and hypocalcemia-induced torsade de pointes triggered by hemodialysis. Am J Ther 2004;11(1):77-79. PMID 14704599. — Tier B case report (one 76-year-old man). PubMed listing summary only.Listing summary only.
  52. Wikipedia: Fluoroquinolone toxicity. — Tier D, used only as a circulating-claim origin. Makes claims on cation chelation (citing Fish 2001), mitochondrial DNA synthesis inhibition, oxidative stress and the term "floxing"; makes no vitamin, ATP or microbiome claims. Read through a summarizing fetch tool.Tier D; never supports a claim.
  53. Stewardson AJ, Gaia N, Francois P, Malhotra-Kumar S, Delemont C, Martinez de Tejada B, Schrenzel J, Harbarth S, Lazarevic V. Collateral damage from oral ciprofloxacin versus nitrofurantoin in outpatients with urinary tract infections: a culture-free analysis of gut microbiota. Clin Microbiol Infect 2015;21(4):344.e1-11. PMID 25658522; DOI 10.1016/j.cmi.2014.11.016. — Tier A (prospective observational cohort, ciprofloxacin versus nitrofurantoin versus no antibiotic, plus household contacts; 16S V3-V4 pyrosequencing). Abstract read as a PubMed single-record listing; OpenAlex record has no abstract; full text not opened (publisher redirect empty, ScienceDirect disallowed). Group sizes and indices not retrieved.Abstract only; no n or index values.
  54. Sailer J, Schmitt S, Zischka H, Gnaiger E. Direct effects of clinically relevant antibiotics on mitochondrial respiration. Int J Mol Sci 2025;26(11):5379. DOI 10.3390/ijms26115379. — Tier B in vitro (permeabilized HEK 293T cells; gentamicin, ciprofloxacin and amoxicillin). MDPI article page read through a summarizing fetch tool: ciprofloxacin results quoted in the Mitochondrial burden and ATP entries.Summarizer output; concentration for the leak effect differs between Results and Discussion.
  55. NIH Office of Dietary Supplements. Vitamin B6, Vitamin B12 and Thiamin: Fact sheets for health professionals (three pages). — Reference fact sheets (Tier C for this drug). Interactions with medications sections read through a summarizing fetch tool: B6 lists cycloserine, valproic acid, carbamazepine, phenytoin, phenobarbital, levetiracetam and theophylline; B12 lists PPIs, H2 blockers and metformin; thiamin lists furosemide and fluorouracil. No quinolone or ciprofloxacin is named on any of the three. Used only as a circulating-claim check.Also https://ods.od.nih.gov/factsheets/VitaminB12-HealthProfessional/ and https://ods.od.nih.gov/factsheets/Thiamin-HealthProfessional/; none names ciprofloxacin.
  56. PubMed listings run in this repair for B vitamins and mineral status (listing summaries only, run 2026-10-08, spaced): "ciprofloxacin cobalamin" (9 records), "ciprofloxacin \"vitamin B6\"" (3), "ciprofloxacin thiamine" (2), "ciprofloxacin zinc deficiency" (4), "ciprofloxacin hypomagnesemia" (5: PMIDs 36506733, 12641485, 20210367, 37791144, 14704599). — Tier B/C listing records. None of the B vitamin records measured vitamin status in a ciprofloxacin-treated person (formulation, bacterial, prescribing and sepsis-review records). The hypomagnesemia listing returned two case reports with low magnesium (PMID 36506733: attributed to chronic proton pump inhibitor use, magnesium normalized after the PPI was stopped; PMID 37791144: no cause stated, ciprofloxacin only the initial treatment; abstracts re-read on a second channel via OpenAlex, full texts not opened), two geriatric safety reviews that list low magnesium as a reason for caution (not a measurement), and the hypocalcemia torsade case already cited. A combined Boolean mineral query ("serum magnesium OR serum zinc OR ...") returned no matching records.Listing summaries only.
  57. Jijie R, Paduraru E, Simionov IA, Faggio C, Ciobica AS, Nicoara M. Effects of single and combined ciprofloxacin and lead treatments on zebrafish behavior, oxidative stress, and elements content. Int J Mol Sci 2023;24(5):4952. PMID 36902383; DOI 10.3390/ijms24054952. — Tier B (zebrafish, ciprofloxacin 5 mg/L, lead, and the mixture for 96 hours; n = 10 per group for behavior, n = 5 per group for elements and biomarkers). OpenAlex abstract and the MDPI article page read through a summarizing fetch tool: ciprofloxacin alone no significant effect on whole-body elements or on MDA, SOD, GPx or AChE; mineral deficits (Ca, K, Mg, Na) and excess Zn only in the lead-containing mixture. Figures 3 and 4 (element and biomarker values) not seen.Animal null at a high concentration; summarizer output; figure values not seen.